Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03989 ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATATAACACTGGGTTCAATTCTAAGTATGTGAGTACGGATGGAAATGATCTCCGCGGCACAAACGATAAGGTTTCATCAATCTCAGTGCCACAGACTCCTCGGAGTGAGGGTGAGATCTTGCAGTCATCCAATTTAAAGAGCTTTACCTTATCAGAACTTAAGACAGCCACTAGAAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATCGATGAGAATTCATTGACTGCTACCAAACCTGGCACTGGCATTGTTATTGCTGTTAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCCGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTTTTGCCTTGAAGATGAACACCGCCTTCTCGTCTATGAATTTATGCCCCGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGCTCATATTTTCAACCACTTTCTTGGAGCCTCCGTTTGAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTGCACAGTGCTGAAGCAAAAGTGATATATAGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCAAATTATAATGCAAAGCTTTCTGATTTTGGGCTGGCAAAGGACGGACCAACAGGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTGCTAAGAGCGATGTCTATAGTTTTGGAGTTGTCCTGCTGGAAATGTTATCTGGCAAGAGGGCAGTTGACAAGAATAGACCCTCTGGACAACACAATTTGGTGGAATGGGCTAAACCTTACCTGGCAAACAAGCGTAAGATATTCCGCGTGTTGGACACCCGGCTTGAAGGACAATATTCAATAGATGATGCCAGTAAGGTAGCCACCCTTGCCTTGCGATGCCTATCAATAGAATCCAAGTTCAGGCCTAACATGGATGGAGTGGTTACAACATTGGAGCAGTTGCAGGTTTCTAATGTAAATGGAGCCAATCAAAACGGGCCTCGTGTTCGTAGAAGAAGTGCTGATGTGAACAGAGGCTATCAAAATCCTTCTGTTAATGGATCTCGAGTTCGTAGAAGAAGTGCCGATGATATTAGCCGTGTGGAGACTCCCACAGCTTATCCCCGGCCCTCTGCATCCCCTCTCTATACTTGA 1269 0.45 MGVCLSAQIKAESPYNTGFNSKYVSTDGNDLRGTNDKVSSISVPQTPRSEGEILQSSNLKSFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAEAKVIYRDFKTSNVLLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPYLANKRKIFRVLDTRLEGQYSIDDASKVATLALRCLSIESKFRPNMDGVVTTLEQLQVSNVNGANQNGPRVRRRSADVNRGYQNPSVNGSRVRRRSADDISRVETPTAYPRPSASPLYT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03989 422 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03989 422 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Pumo4g03989 422 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Pumo4g03989 422 SUPERFAMILY Protein kinase-like (PK-like) 47 356 IPR011009 -
Pumo4g03989 422 MobiDBLite consensus disorder prediction 30 52 - -
Pumo4g03989 422 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Pumo4g03989 422 PANTHER OS01G0588500 PROTEIN-RELATED 46 360 - -
Pumo4g03989 422 CDD STKc_IRAK 80 359 - -
Pumo4g03989 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Pumo4g03989 422 MobiDBLite consensus disorder prediction 365 422 - -
Pumo4g03989 422 Gene3D Transferase(Phosphotransferase) domain 1 160 380 - -
Pumo4g03989 422 FunFam Probable serine/threonine-protein kinase PBL8 160 375 - -
Pumo4g03989 422 Pfam Protein tyrosine and serine/threonine kinase 78 355 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03989 Pumo-Chr4 80519055 80522285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03989 52 356 Glycoside Hydrolase AT3G07070 49.673 1.07e-103 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo4g03989 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03989 - - gmx:100798404 804.283