Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03983 ATGGAGCTTTTGAAGCCTTTGCACCCTCACCATGCACCCATTTTGCAAATTCCCTTTCACGGGGTTCCTTCTTCTTCTCAATTTCAGTCTCAGGTTCCCCTTCCTATGATTTCTAAGGTTCATGTAGCTGTTGGGAAATCGCTGGACAAAGCTGTTCCCTTGCTTCGATGGACTTTAAACCACTTTCGGAACGCGGAAATCGTCATTGTTCATGCTTATCAACCTTCTCTCACCATCCCCACTCTATTGGGGAAATTGCCTGCATCACAGGCTAGTCCTGCAGTCGTGTCTGCTTTTCGAAAAGTGGAAAGAGAACAGACCATGAAGCTTTTAGACAAGTATTTGAGCATTTGCCACGCAGCTAGGGTTAAGGCCAGTATTATTGTAACTGAAGCTGACCAAGTCCAAAAAGGAATTGTTGATTTGGTTATTAAGCATAATATTCAGAAGCTTGTCATTGGAGCAGTACCAGAAAATTGCATGAAAGTGAAAAGGAATTCCAGCAAAGCAAATTACACTGCCAAAAATGCTCCTCCTTTCTGTGAAGTATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAGGCTTCTGAAACACCATGTTCTTCATCCTCATGTACTCAACCTGAGATTGCCACCGCAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAATTATTTGACACAGAATATCTTCAACCAAATTCAGCAAGAACTACTACTGGTTCTGGAATTAGAAGTTGGGTTCAGGGGGAAATCATTGAAACCGAAGCCACTTTTTCATCCAAAGCATCCAGTTGCAGCAGTCATTGTTCCCCCCAAAATTCTTCTCGGGCTTATTTAGATACATATTTAGAGGCCATGGAAGAAAGAATTAACAAACAACTTATTGAAACCAAGAGAGAAGCAGAGGCAGTAACAGACGAAGCCTTCGCAGAGCTATTAAAGTGTGAGAGGTTAGAAGTTGAAGCCATGGAGGCCATAAGGAAGGTCAATTTGTTTGAATCTGCCCATGTGCGTGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCACTGAGAGCTACAGTACAAGAACAACAAAAGCTCTTGAATGAGAGTGAAGAAATTGCTGGCGAGCTACAAATGACCATGAGAAATATTGCCCTGCTAGATAGTCGTGCTCAGGAAGCAAACCGTAGGCGCGATGAAGCTGCAGATGAACTATCACTAATTCAAGAATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTACGTTGGCTTGAGCGGTGGAGAAGTCGTGGACAAGTTGGAGCAGCTCATTGCAATGGGGTGATTGGGTTTGCTGAAGAGTTACCTGAGTTAGCAGAATTTTCATTATCAGATCTTCAAAATGCCACATGTAATTTTTCCAATAGCTTTAAAATTGAGCAAGGTGGATACGGTTGTATATACAAGGGGGAAATGTTGGGTAGGACTGTTGCTATAAAAAAGTTCCATCAACATAACGTGCAAGGACCATTGGAGTTTCGTCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTAATCACTTTACTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGCAACAATTCCCCTTTGACATGGAATACCCGAGCACAAATGATTGCTGAAATCGCTAGTGCACTCTGCTTCCTACATTCTTTTAAACCTGAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCTTCACTTGGTTGCAAGATGTGTGGATTTGGGTTCAGCAGGCTGGTGAGTGAGGAGTCTCTCCTCCGTCCTAATTTCCGCTTGAGCACCGAACCAAAGGGTGCTTTCACATATACGGATCCAGAGTTTCAGAGAACTGGAATACTAACAACCAAGTCTGACATCTACTCCTTCGGGCTCATCATTTTACAACTCCTCACTGGTAGGACTCCAGTTGGATTAGCAGTTTTAGTTCGCAATGCAGTTTCATGTGGAAAGTTGTCTTCAATTCTGGATTCTTCAGCTGGAGAATGGCCCTCAGCTGTGGCAACACGATTGGTTGAACTGGGATTGCAATGCTGTCAACAAAATCGTAGAGACAGACCAGAGTTAACACCTACCCTTGTGAGAGAATTGGAGCAGTTGCATGCTTCAGAAGAACGACCTATACCATCTTTTTTCTCATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCGGCAGACGGATTTACCTATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGGCATGATACTTCTCCCATGACTAATTTGAAATTGAGTCACCTGTTTCTTACTCCCAATCACGCACTTCGACTTGCCATCCAAGACTGGCTTTGCAAATCTTAA 2460 0.4301 MELLKPLHPHHAPILQIPFHGVPSSSQFQSQVPLPMISKVHVAVGKSLDKAVPLLRWTLNHFRNAEIVIVHAYQPSLTIPTLLGKLPASQASPAVVSAFRKVEREQTMKLLDKYLSICHAARVKASIIVTEADQVQKGIVDLVIKHNIQKLVIGAVPENCMKVKRNSSKANYTAKNAPPFCEVWFIYKGKHIWTREASETPCSSSSCTQPEIATAESLRCRSFQYGKNELFDTEYLQPNSARTTTGSGIRSWVQGEIIETEATFSSKASSCSSHCSPQNSSRAYLDTYLEAMEERINKQLIETKREAEAVTDEAFAELLKCERLEVEAMEAIRKVNLFESAHVREVKLRKEAEDALRATVQEQQKLLNESEEIAGELQMTMRNIALLDSRAQEANRRRDEAADELSLIQESISTLWQERQQIRRQKMEALRWLERWRSRGQVGAAHCNGVIGFAEELPELAEFSLSDLQNATCNFSNSFKIEQGGYGCIYKGEMLGRTVAIKKFHQHNVQGPLEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRAQMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLGCKMCGFGFSRLVSEESLLRPNFRLSTEPKGAFTYTDPEFQRTGILTTKSDIYSFGLIILQLLTGRTPVGLAVLVRNAVSCGKLSSILDSSAGEWPSAVATRLVELGLQCCQQNRRDRPELTPTLVRELEQLHASEERPIPSFFSCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLFLTPNHALRLAIQDWLCKS 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03983 819 SMART Ubox_2 752 815 IPR003613 GO:0004842|GO:0016567
Pumo4g03983 819 Coils Coil 349 369 - -
Pumo4g03983 819 PANTHER OS02G0152300 PROTEIN 40 813 - -
Pumo4g03983 819 Pfam U-box domain 749 818 IPR003613 GO:0004842|GO:0016567
Pumo4g03983 819 ProSiteProfiles Protein kinase domain profile. 475 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03983 819 SUPERFAMILY Protein kinase-like (PK-like) 459 735 IPR011009 -
Pumo4g03983 819 Gene3D Phosphorylase Kinase; domain 1 452 547 - -
Pumo4g03983 819 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 750 819 IPR013083 -
Pumo4g03983 819 SUPERFAMILY RING/U-box 744 818 - -
Pumo4g03983 819 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 36 177 - -
Pumo4g03983 819 Gene3D Transferase(Phosphotransferase) domain 1 548 749 - -
Pumo4g03983 819 Coils Coil 293 313 - -
Pumo4g03983 819 Gene3D HUPs 26 187 IPR014729 -
Pumo4g03983 819 Pfam Protein tyrosine and serine/threonine kinase 480 731 IPR001245 GO:0004672|GO:0006468
Pumo4g03983 819 CDD STK_N 39 189 - -
Pumo4g03983 819 CDD RING-Ubox_WDSUB1-like 750 805 - -
Pumo4g03983 819 Coils Coil 377 411 - -
Pumo4g03983 819 ProSiteProfiles U-box domain profile. 748 819 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03983 Pumo-Chr4 80465189 80469699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03983 39 816 U-box Gene Family AT2G45910 37.360 6.76e-171 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pumo4g03983 PK_Tyr_Ser-Thr 2.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03983 - - gmx:100788846 1546.95