Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03973 ATGGAGAGTCACACTGCAGAGGCTGAGAATGGAAAGAGAGGATCAAGTGGGACTCATTCAGTTTCACGGTGGAGCCCTACAAAGGAGCAAATAGCCATGTTGGAGAACCTTTACAAGCAGGGAATAAGGACTCCCAATACTGAGCAAATACAACAGATTACCTCTAGGCTCAGGGCTTATGGTCACATCGAGGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCGCGCCAGAGACAGAAGCTCAAGCAGAAGCAACAAAGCATTGCATATTCCAATCCCTTTCTTCATGCCTCCCACCCCATTTGCCAGAATGTTGTCTGTGCCCCATATTGTTTGCAGCAGAGTGGATTAAGCTTTTATCCTCAACAATCAAAGGTGCTTGCAACTGGAGGTATTTTTGGCATGCCAAGAATGTGTCATGGGATGCAGAGTGAACACCCGGATTATAACTATAGCACCAGTAACCGTGAAGCCTTAACTCTCTTTCCTCTTCATCCCACCGGCATTTTGGAAGAAAAAACAACTGATCAAGTGCCTTCCCTTGCTTCAATTTCAGTGGATGTCACCGACACATCTTTTGGTTCTTTTGCTGTTGATGAAGATGGCCATCTTGGAAATCAACCCTTCTTTAATTTTTTCACTACTGAATCAAGGTCTCAGGAGAGTGATTAG 678 0.4454 MESHTAEAENGKRGSSGTHSVSRWSPTKEQIAMLENLYKQGIRTPNTEQIQQITSRLRAYGHIEGKNVFYWFQNHKARQRQKLKQKQQSIAYSNPFLHASHPICQNVVCAPYCLQQSGLSFYPQQSKVLATGGIFGMPRMCHGMQSEHPDYNYSTSNREALTLFPLHPTGILEEKTTDQVPSLASISVDVTDTSFGSFAVDEDGHLGNQPFFNFFTTESRSQESD 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03973 225 CDD homeodomain 23 77 IPR001356 GO:0003677
Pumo4g03973 225 Gene3D - 14 82 - -
Pumo4g03973 225 ProSiteProfiles 'Homeobox' domain profile. 17 82 IPR001356 GO:0003677
Pumo4g03973 225 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 185 IPR044555 GO:0003700|GO:0099402
Pumo4g03973 225 SMART HOX_1 19 86 IPR001356 GO:0003677
Pumo4g03973 225 Pfam Homeodomain 22 81 IPR001356 GO:0003677
Pumo4g03973 225 SUPERFAMILY Homeodomain-like 19 87 IPR009057 -
Pumo4g03973 225 MobiDBLite consensus disorder prediction 1 25 - -
Pumo4g03973 225 FunFam WUSCHEL-related homeobox 4 21 89 - -
Pumo4g03973 225 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03973 Pumo-Chr4 80353171 80354555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03973 15 225 Wox Gene Family AT5G59340 40.000 5.00e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo4g03973 Homeodomain 3.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03973 - - gmx:100779632 335.495