Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03965 ATGTCTGCGGCTTTGGACATGACCCTCGAAGATATCATCAAGAACAACAAGAAGTCCGCTCCCGCCAACACCAGGGGCCGTGGTCGAGGGTCGGGACCCGGACCCGCTCGCCGCTTCCCCAACCGTGCCGCCAATCGCGCCGCACCATATGCCACCGCCAAGTCACCGGAGACCCCCTGGAAGCATGACATGTATGCTGACCAGCCCGTTGCGGCGGCGTATCCAGGTGGTCGAGCGTCTTCAATCGAAACTGGGACCAAGCTTTACATATCTAATTTGGATTATGGCGTTTCCAATGATGATATCAAGGAGTTGTTTCTTGAAGTTGGTGACCTGAAACGGCATACTGTTCATTATGACAGGAGTGGGAGATCAAAGGGCACGGCAGAAGTGGTTTTCTCGCGCCGAGCTGATGCTGTAGCTGCAGTGAAGAGGTACAACAACGTTCAGCTAGATGGGAAACCAATGAAGGTCGAGATTGTGGGGACAAACATCGCTACACATGCTGTGGTGCCTGCTGTGAATGGATCTTTTGGAAATCCAAATGGAGTTCCCAAGAGTGGACAAGGGAGAAGTGGGCCATTAGGAAGGCCACGTGGTGGGGCTAGAGGGCGCGGCGGCATTCGAAGGGGTCGAGGACGTGGAAGAGGAGGTCGTGGTGAAAAGGTATCTGCTGAAGATCTGGATGCTGATTTGGAGAAGTATCATGCTGAGGCTATGCAATTAAACTGA 732 0.5355 MSAALDMTLEDIIKNNKKSAPANTRGRGRGSGPGPARRFPNRAANRAAPYATAKSPETPWKHDMYADQPVAAAYPGGRASSIETGTKLYISNLDYGVSNDDIKELFLEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATHAVVPAVNGSFGNPNGVPKSGQGRSGPLGRPRGGARGRGGIRRGRGRGRGGRGEKVSAEDLDADLEKYHAEAMQLN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03965 243 CDD RRM_THOC4 86 160 - -
Pumo4g03965 243 MobiDBLite consensus disorder prediction 14 63 - -
Pumo4g03965 243 FunFam THO complex subunit 4 79 226 - -
Pumo4g03965 243 SUPERFAMILY RNA-binding domain, RBD 81 182 IPR035979 GO:0003676
Pumo4g03965 243 SMART FoP_duplication_2 174 243 IPR025715 -
Pumo4g03965 243 MobiDBLite consensus disorder prediction 176 226 - -
Pumo4g03965 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 163 IPR000504 GO:0003723
Pumo4g03965 243 Gene3D - 74 226 IPR012677 -
Pumo4g03965 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 156 IPR000504 GO:0003723
Pumo4g03965 243 Coils Coil 225 243 - -
Pumo4g03965 243 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 241 - -
Pumo4g03965 243 Pfam C-terminal duplication domain of Friend of PRMT1 188 237 IPR025715 -
Pumo4g03965 243 SMART rrm1_1 87 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03965 Pumo-Chr4 80298310 80300575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03965 85 160 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 5.54e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03965 K12881 - gmx:100783362 357.836