Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03961 ATGCGCTACTCCCTCTTCGCCAATGGCAAGAGGGTCAGCCTGGTGCTCTACATCACTGCCTGCAAGCTCGTCGACGGGAGCGAGGCCACTGTCCTCCCTGCCGCGTGCACCGTCGAGATGATCCACACCATGTCACTCATTCACGACAATTTTCCCTATATGGACAACAACGACCTCCGCCGCGAAAAACTGACCAACCTGGTTTTCGGCAAGGATGTGGCGGTCCTCGCCGACAACGCGTTGCTGGCATTTGCGTTCAAGCACGTGGTGATGACAGCGAAGGGCGTGTCGACGACGAAGGTGGTTGGCGCAATTGGGGAGTTAGCGAAATCGATTGGCGTGGAAGGGTGTGTGGCGGAACATGTGGTGGATATAGAGTCAAAAGGGATGTTGAATGTGGGTTTGGAGAGGTTGGAATTCATTCATGTGCACAAAATGGCAACGTTGCTGGAAGCTTCAACTGTGTTGGGGGTATTAGTGGGGGATGGGTCAGACGAGGAGGTTAAGAGATTAAGGGGGTTCATGTGCACAAAACAAACAAAATTAAGCATTTGTAGAATCCTTGCACGAAGAAGTTGCAAGGTAAACATTAGAATCAATCGGAAAGTGGAGATGTCACAGAGAATAGGGACAAAGCTCTTCGTCTACAGATTATCCTTTTACACTACACAGGACCAGCTGAAGAACTTGTTCTCTCCATTCGGAGTAGTGACCCAAGCTGATCTAGTGCTGGATCCTAGAACTAAAAGGCCCAAAGGGTTCGGGTTTGTCTCCTACGAGTCTGAAAATGAAGCGGAAAAGGCTATGAAAGCCATGAATGGCAAGATTGTTAATGGACGGCTGATTTTGGTTGAACCTGCAAACGAGAAATGA 873 0.4948 MRYSLFANGKRVSLVLYITACKLVDGSEATVLPAACTVEMIHTMSLIHDNFPYMDNNDLRREKLTNLVFGKDVAVLADNALLAFAFKHVVMTAKGVSTTKVVGAIGELAKSIGVEGCVAEHVVDIESKGMLNVGLERLEFIHVHKMATLLEASTVLGVLVGDGSDEEVKRLRGFMCTKQTKLSICRILARRSCKVNIRINRKVEMSQRIGTKLFVYRLSFYTTQDQLKNLFSPFGVVTQADLVLDPRTKRPKGFGFVSYESENEAEKAMKAMNGKIVNGRLILVEPANEK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03961 290 Gene3D Farnesyl Diphosphate Synthase 1 176 IPR008949 -
Pumo4g03961 290 Gene3D - 192 290 IPR012677 -
Pumo4g03961 290 Pfam Polyprenyl synthetase 2 174 IPR000092 GO:0008299
Pumo4g03961 290 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 1 174 - -
Pumo4g03961 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Pumo4g03961 290 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 206 290 - -
Pumo4g03961 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 282 IPR000504 GO:0003723
Pumo4g03961 290 SMART rrm1_1 212 285 IPR000504 GO:0003723
Pumo4g03961 290 SUPERFAMILY RNA-binding domain, RBD 210 289 IPR035979 GO:0003676
Pumo4g03961 290 SUPERFAMILY Terpenoid synthases 1 175 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03961 Pumo-Chr4 80255518 80263083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03961 198 290 Eukaryotic Initiation Factors Gene Family AT1G22760 36.559 1.39e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03961 K13789 - gmx:100778289 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03961 4 80255518 80263083 Pumo4g03961 4 80255518 80263083 ECH