Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03959 ATGGTCACAGATCTTTCGTGCCATCATGAGTTGCCGAGCCCAACCATGAAACAACCTAGGATGCACCCGTGTCCGATTTGTGGGCTTGAGTTTGGCATTGGACAAGCCTTGGGAGGGCACATGAGAAAGCATAGAAGTGCTATTAATGATGGTTTATTGCTGAGTCATCGTAGAGATTCAGATCATTCGTTGTCCATGTTGAAGAAATCGAAAGATGGTGAACGGTTGAATTTGCGGTTGGACTTGAACTTGACGCCATTGGAGGAGGATGATCTTAAGCTCAACCTAAGGACGCCCGTCCTCAATTGTTTCATTTGA 318 0.4591 MVTDLSCHHELPSPTMKQPRMHPCPICGLEFGIGQALGGHMRKHRSAINDGLLLSHRRDSDHSLSMLKKSKDGERLNLRLDLNLTPLEEDDLKLNLRTPVLNCFI 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03959 105 PANTHER ZINC FINGER PROTEIN ZAT5 7 91 - -
Pumo4g03959 105 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Pumo4g03959 105 SUPERFAMILY beta-beta-alpha zinc fingers 19 46 IPR036236 -
Pumo4g03959 105 Pfam C2H2-type zinc finger 22 46 - -
Pumo4g03959 105 Gene3D Classic Zinc Finger 18 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03959 Pumo-Chr4 80244206 80245039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03959 9 96 C2H2 Transcription Factor Family AT2G28710 47.727 5.54e-18 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03959 - - gmx:100813871 161.77