Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03955 ATGACCCCCCAGGAAGAGCGCCTTGTCTTGGAGCTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACAGACAATGAGATTAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGACAAGAAGCGAGGAGAAGCTGCATCACCAACACCCTCTTGTGTTCATTCCTCAATATCCTCAAACAACCATGCAGTGGATCCACATGTTTCCAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTTGCAAAGGTGTGATAGCAGGCTCAACCCAAGATCAGGGTCAAAAAGGTGAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGATGACATGTCAGAAGAGAACACTCTTCAGCCAGTAGTGTATGATGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACAAGTGCCTTCTCCATCATCATGGGAGTATTCTTCTTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAACCATATTTTTCCTGCTATGCACAAGGCAGCGTTTTTTTAACCGGCTAA 585 0.4598 MTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQDKKRGEAASPTPSCVHSSISSNNHAVDPHVSKKAGEESFYDTGGCKGVIAGSTQDQGQKGEQGLFSMDDIWKDIDDMSEENTLQPVVYDGHSEEGCNFSCPQVPSPSSWEYSSSDPLWVMDEESLFCPLSEPYFSCYAQGSVFLTG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03955 194 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Pumo4g03955 194 MobiDBLite consensus disorder prediction 59 75 - -
Pumo4g03955 194 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Pumo4g03955 194 CDD SANT 1 43 IPR001005 -
Pumo4g03955 194 MobiDBLite consensus disorder prediction 45 81 - -
Pumo4g03955 194 FunFam MYB transcription factor 1 67 - -
Pumo4g03955 194 SMART sant 1 45 IPR001005 -
Pumo4g03955 194 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 54 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo4g03955 194 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Pumo4g03955 194 Gene3D - 2 66 - -
Pumo4g03955 194 Pfam Myb-like DNA-binding domain 2 42 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03955 Pumo-Chr4 80154646 80156502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03955 1 171 MYB Transcription Factor Family AT3G46130 54.802 2.21e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo4g03955 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03955 K09422 - gmx:778055 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01563 11 46873990 46875772 Pumo4g03955 4 80154646 80156502 PCT