Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03951 ATGTCTCTAGGCTTGTTGGCTAAAGAGGCTGGTATAGTTTTAGCAATAGGTATATTGTTACTTATAGTGAGTGAGTGGAGAAATATTGTGCGTTTTTTGTGTAGACTTAACCGTTCAAACTCAAACTCTGGTAGAAACAGGGTTGAAGGGCAATTTGTAGAGGAAACAATTCCTAATGAGTATTCTACAGAGTTTCCAAGTGGTAACTTTGAGTTCTCTATGATAAACTCTCTTCCGGTGATTGAGTTTAAGAAAGATGAGGGGGAACAACATATGCCAGTTAATGCGGACTGTGCCATTTGTTTGGGGGAATTTGAAGAAGGGGAATGGCTCAAACTTCTTCCTAATTGCACCCACGGCTTCCACGTTTCGTGCATTGACACGTGGTTTCGGTCTCATTCGAATTGCCCACTTTGCAGATCTTATGTTAGTCATGACACAGAGTGCTCTGTTTCTTTGTACACGCTCGTAGAAACTTCCAGGAGGGAAGACTTTTTTTCCACTGTATCCGCTACGTATTTCCAATCCATTCAAATCCCTCAAAATTTGGAGACTACACACCATTCCTGTCCTGCTGATTAA 582 0.4141 MSLGLLAKEAGIVLAIGILLLIVSEWRNIVRFLCRLNRSNSNSGRNRVEGQFVEETIPNEYSTEFPSGNFEFSMINSLPVIEFKKDEGEQHMPVNADCAICLGEFEEGEWLKLLPNCTHGFHVSCIDTWFRSHSNCPLCRSYVSHDTECSVSLYTLVETSRREDFFSTVSATYFQSIQIPQNLETTHHSCPAD 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03951 193 SUPERFAMILY RING/U-box 75 146 - -
Pumo4g03951 193 CDD RING-H2_EL5-like 97 140 - -
Pumo4g03951 193 Pfam Ring finger domain 97 140 IPR001841 -
Pumo4g03951 193 SMART ring_2 98 139 IPR001841 -
Pumo4g03951 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 147 IPR013083 -
Pumo4g03951 193 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Pumo4g03951 193 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 146 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03951 Pumo-Chr4 80125655 80126236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03951 64 143 C3H Transcription Factor Family AT5G10380 51.250 7.10e-23 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03951 - - gmx:102660592 254.603