Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03931 ATGTATGCACAGTCCAGTAGCACTGCATCACCCCTTCCCTCTTCTTCTCCACTCTTCCCCGACTTCACTGAATTCGACACCCTCTCCCAACTCAACACTTCTGAGACCAGTTACAACAACAACAACAATGGTAACTGTAGCAGTGGCTATAGCAGTTACGGTGGGTCACCTTCACCCACTTCTATGCCCAGTCCCAACTTGATGCAGAGGAGTGTTAGCTCCCATTCCTTCCACTACAACAACAATGGCATCCACCACCACCCCTTTTCTGCTCTCTTTGCTGAGCTGCTCGACTCCGACGACGCTCCCGTTAGGAGAGTTTGCAGCACCGGTGATCTCCAGAGGATTAATGGAATGCAACATAATCATCACACGGATAGTCCGTTATCAAGCGAAAGTAGTATGATCATAGAAGGAATGAGCAGAGCCTGTCGATATAGCCCGGAGGAAAAGAAGGTGAGAATTGAGAGATACAGAAGCAAGAGGAACCAGAGGAACTTCAACAAGAAAATTAAGTATGCTTGCAGGAAGACATTGGCAGACAGCAGGCCACGCATTAGAGGACGGTTTGCAAGGAATGATGAAATTGACAAGAACACTACAATTCAGTGGAGCCAACTTGGTGCTGGAGAGGAAGAGGATGAAGAAGATGAGAATTGGGTCACTATGTTAGATTCCTTAGTTGCTGCAAATTTTGCTCAGGAGTCTCAAGGCAGTTCCTCCTTTGGTCTATTCTATTAG 741 0.4696 MYAQSSSTASPLPSSSPLFPDFTEFDTLSQLNTSETSYNNNNNGNCSSGYSSYGGSPSPTSMPSPNLMQRSVSSHSFHYNNNGIHHHPFSALFAELLDSDDAPVRRVCSTGDLQRINGMQHNHHTDSPLSSESSMIIEGMSRACRYSPEEKKVRIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKNTTIQWSQLGAGEEEDEEDENWVTMLDSLVAANFAQESQGSSSFGLFY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03931 246 ProSiteProfiles CCT domain profile. 151 193 IPR010402 GO:0005515
Pumo4g03931 246 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 55 218 IPR045281 GO:0009909
Pumo4g03931 246 MobiDBLite consensus disorder prediction 49 69 - -
Pumo4g03931 246 Pfam CCT motif 153 193 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03931 Pumo-Chr4 79916519 79919189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03931 147 207 C2C2-CO-like Transcription Factor Family AT5G15850 42.623 3.14e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo4g03931 CCT 8.8e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03931 - - gmx:102661609 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03931 4 79916519 79919189 Pumo4g03931 4 79916519 79919189 ECH
Pumo4g03931 4 79916519 79919189 Pumo11g01534 11 46414596 46417726 PCT