Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03925 ATGGAGCAGTCAGAAAAATCGCCGAAGAAAATATCATCAGTAAGATCATCATTTCCGAGAGATCCACGTGGCTCACTCGAAGTGTTCAACCCGAACACTTCAACTTCAACCAACGCGCGCGTGCGTTCACAGCCGCTTTGGAAATCGTGGACGGACTCGGAAGAACCGCGCCATGAAATCGCCGCCACGTCGTGGATGGCCATCAATCCGGCGCCTCCGGCCGCCGGAGAATGCGGCGCGGCGGCGCAGAGGGCCGCGGAGTGGGGCTTGGTGCTCCGGACTGACAACGAGACCGGCAAGCCGCAGGGCGTGGCGGTGAGAAACTCCGGCGGCGAGGAACCTAACGCCGCCAAACTATCCGCCGCTGCTTCGTCTTCCAGGAAGAACTCTCAGAACTCCGCCAGAACCTCCGGCGACTCTTCCGACGGCGCCGGCGCCGGCGGAGGGATTCCGAGAATATCGGAGGACGTGATGGGGGCTTTGTCGGCTTTTCAACAAACTTTCGTGGTTTCGGATGCAACCAAACCCGATTACCCGATACTGTATGCGAGTGCCGGGTTCTTTAAAATGACGGGTTATACGTCCAAGGAAGTTATTGGGAGAAACTGTCGGTTTTTACAGGGTGCGGACACGGATCCTGATGACGTAGCAAAGATAAGGGAAGCATTGCAAGCTGGGAAAATTTACTGCGGAAGGCTATTAAATTACAAGAAGGATGGAACACCTTTCTGGAACCTTCTCACTATTTCACCCATTAAGGATGAAGATGGCAAAGTGCTCAAATTTATTGGAATGCAAGTGGAGGTTAGCAAGCATACCGAGGGGTCCAAGGAGAAGATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATATGATGCTCGTCAGAAAGAGAAGGCTACAAGTTCAGTAACTGAGTTGGTGCAGGCCATGAAGCGCCCCCGAGCATTAAGTGAATCTGCAAGCCGTCCCTCCATCAGAAAATCAGGATTTGCCGAGGAAGAAAAAGTAGAAGAAGAAAAACAGAAAGAAGAGAAAGAGAAAGCAGAAAAAACATTAAGAAGAAAATCTGAGAGTGGGGCCTCATTTGGACGCAAATCAGAAGGAGGAAATAGAATTTCAATGCAACGAATCAGTGAACTGCCTGAAAATAAACACAAAAACTCTCAACGACGTTCTTTCATGGGTTTCAGGAGGAAAAGTCAGTCCAATGATGAAAGCATGGATAATGAAGTTATTGAGGACGTGAGCTCCGAGAGTGAGGATGATGAGAGGCCTGATAGTTTTGAACTCGATGACAAAGAAAAGCATAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAATCTTTGCGTCGGATAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGGAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACCGTGCAACTGATTAATTATACAAAGAGTGGAAAAAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAACTGCATCGCAGAAGATACTGCAAAGGAGGGAGAACAAATGGTCAAACAAACTGCAGAAAATGTTGATGAGGCAGTGAGAGATCTTCCGGATGCTAATATGAAACCAGACGATTTATGGGCAAATCATTCAAAAGCAGTTCACCCGAAACCTCATAGGAAGGATGACCCTGCATGGAAAGCTATCCAGAAGGTCCTAGAAAGTGGAGAACAGATAGGCTTAAAGCACTTTAGACCAATTAAACCTTTGGGGTCAGGAGATACTGGCAGTGTGCATCTGGTGGAGCTACGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCGCAGAGAGAGAAATTCTTGACAAGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAAACACACGTTTGTTTGATAACTGATTATTGTCCTGGGGGAGAATTATTCCTGCTTCTTGACCGGCAGCCAACTAAGGTTCTCAAGGAAGATGCCGTGAGATTTTATGCAGCTGAGGTAGTGATCGCATTGGAGTATCTTCATTGCCAAGGGATAATATATCGAGATTTGAAGCCAGAAAATGTGTTGATCCAGAGCAATGGCCATGTGTCCCTAACAGATTTTGATTTGTCATGTTTAACATCTAGCAAGCCACAGCTTATAATTCCAGCTACCAATTCAAAAAAGAAGAAAAAGAAGAAACAACAGAAAAATCAGGAGGTTCCAATGTTTATGGCAGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACGGAAGAGTACATTGCTCCGGAGATTATAACTGGTTCAGGTCACACAAGTGCTGTGGATTGGTGGGCTCTAGGTATTCTAATATATGAAATGCTTTATGGGTATACGCCATTCCGGGGGAAGACAAGACAAAAAACATTTGCAAATATTCTTCATAAGGATCTTAAATTTCCCAAAAGTAAACCGGTAAGTCTACAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCCAAAGACAGATTGGGTTCACGTGAAGGAGCAAATGAAATTAAACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTCTCTTACCGGAAACTGATGAAGAAAAAGAAGCCAAAGATATAGATCCTGGGCTACAGGATCTACAGACAAATGTTTTCTGA 2943 0.4543 MEQSEKSPKKISSVRSSFPRDPRGSLEVFNPNTSTSTNARVRSQPLWKSWTDSEEPRHEIAATSWMAINPAPPAAGECGAAAQRAAEWGLVLRTDNETGKPQGVAVRNSGGEEPNAAKLSAAASSSRKNSQNSARTSGDSSDGAGAGGGIPRISEDVMGALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDVAKIREALQAGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMQVEVSKHTEGSKEKMLRPNGLPESLIRYDARQKEKATSSVTELVQAMKRPRALSESASRPSIRKSGFAEEEKVEEEKQKEEKEKAEKTLRRKSESGASFGRKSEGGNRISMQRISELPENKHKNSQRRSFMGFRRKSQSNDESMDNEVIEDVSSESEDDERPDSFELDDKEKHREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAEDTAKEGEQMVKQTAENVDEAVRDLPDANMKPDDLWANHSKAVHPKPHRKDDPAWKAIQKVLESGEQIGLKHFRPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSSKPQLIIPATNSKKKKKKKQQKNQEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKDRLGSREGANEIKRHPFFRGVNWALVRCMKPPELDAPLLPETDEEKEAKDIDPGLQDLQTNVF 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03925 980 ProSiteProfiles PAC domain profile. 517 571 IPR000700 -
Pumo4g03925 980 Coils Coil 330 360 - -
Pumo4g03925 980 Gene3D PAS domain 432 596 - -
Pumo4g03925 980 MobiDBLite consensus disorder prediction 1 58 - -
Pumo4g03925 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Pumo4g03925 980 CDD STKc_phototropin_like 642 958 - -
Pumo4g03925 980 MobiDBLite consensus disorder prediction 312 442 - -
Pumo4g03925 980 CDD PAS 180 269 IPR000014 -
Pumo4g03925 980 MobiDBLite consensus disorder prediction 329 363 - -
Pumo4g03925 980 SMART pac_2 520 562 IPR001610 -
Pumo4g03925 980 SMART pac_2 230 272 IPR001610 -
Pumo4g03925 980 SMART pas_2 155 224 IPR000014 -
Pumo4g03925 980 SMART pas_2 445 514 IPR000014 -
Pumo4g03925 980 MobiDBLite consensus disorder prediction 93 149 - -
Pumo4g03925 980 SUPERFAMILY PYP-like sensor domain (PAS domain) 174 266 IPR035965 -
Pumo4g03925 980 FunFam LOV domain-containing protein 643 727 - -
Pumo4g03925 980 CDD PAS 458 558 IPR000014 -
Pumo4g03925 980 ProSiteProfiles PAS repeat profile. 153 224 IPR000014 -
Pumo4g03925 980 ProSitePatterns Protein kinases ATP-binding region signature. 650 673 IPR017441 GO:0005524
Pumo4g03925 980 FunFam Putative LOV domain-containing protein 728 947 - -
Pumo4g03925 980 SUPERFAMILY Protein kinase-like (PK-like) 627 955 IPR011009 -
Pumo4g03925 980 ProSiteProfiles PAS repeat profile. 443 516 IPR000014 -
Pumo4g03925 980 FunFam LOV domain-containing protein 432 596 - -
Pumo4g03925 980 SMART serkin_6 644 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03925 980 MobiDBLite consensus disorder prediction 27 50 - -
Pumo4g03925 980 Pfam Protein kinase domain 646 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03925 980 ProSiteProfiles PAC domain profile. 227 281 IPR000700 -
Pumo4g03925 980 MobiDBLite consensus disorder prediction 119 140 - -
Pumo4g03925 980 PANTHER FLIPPASE KINASE 1-RELATED 340 954 - -
Pumo4g03925 980 Gene3D Transferase(Phosphotransferase) domain 1 728 958 - -
Pumo4g03925 980 MobiDBLite consensus disorder prediction 954 970 - -
Pumo4g03925 980 MobiDBLite consensus disorder prediction 409 429 - -
Pumo4g03925 980 Gene3D PAS domain 167 324 - -
Pumo4g03925 980 Gene3D Phosphorylase Kinase; domain 1 643 968 - -
Pumo4g03925 980 FunFam Putative LOV domain-containing protein 167 323 - -
Pumo4g03925 980 ProSiteProfiles Protein kinase domain profile. 644 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03925 980 Pfam PAS domain 174 270 IPR000014 -
Pumo4g03925 980 Pfam PAS domain 466 558 IPR000014 -
Pumo4g03925 980 MobiDBLite consensus disorder prediction 953 980 - -
Pumo4g03925 980 NCBIfam PAS domain S-box protein 180 273 IPR000014 -
Pumo4g03925 980 NCBIfam PAS domain S-box protein 468 558 IPR000014 -
Pumo4g03925 980 SUPERFAMILY PYP-like sensor domain (PAS domain) 459 558 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03925 Pumo-Chr4 79845612 79859745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03925 1 980 AGC Kinase Gene Family AT3G45780 70.381 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pumo4g03925 Pkinase 2.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03925 K20715 - gmx:100817565 1773.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03925 4 79845612 79859745 Pumo4g03925 4 79845612 79859745 ECH
Pumo4g03925 4 79845612 79859745 Pumo11g01528 11 46313424 46329847 PCT