Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03916 ATGTTGGATCTTAATCTGAATGCCGAGTCGACTCAGAACGACGACTCGTTCGTGCTGTTGGACAAGTTCCCCGAAGCTTCGTCGGGAACTTCGAATTCCTCCGTCGTGAATGCGGAGGGGTCGAGCAACGAGGACTCGTGCTCGACACGCGCCGGCGACATGTTCACCTTCAATTTCGGAATCCTCAAGGTGGAAGGCACGAACGACGTGGTCGCGGCGGCGACGACGAAGGAGCTGTTTCCGGTGAGCGCGGAGAGTTGGCAAGGGCAGAGTTCGACGTCGTCGTTTCAGGCTAGGAAGAGTTTGATGGATCTCTCGGTGGATCATCAAAACGGCGAGGTGAAGGTGGTTCAGGTTCAGCAACAGCCTCAGGTGAAGAAGAGTAGGAGAGGTCCAAGGTCTCGGAGCTCTCAGTACAGAGGTGTCACCTTCTACAGAAGAACCGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAACAAGTCTATTTGGGTGGATTTGACACCGCTCATGCTGCTGCTAGGGCCTATGATCGAGCTGCTATTAAGTTCAGGGGACTTGATGCTGATATCAATTTTAATCTCGTTGATTATGAAGAGGATCTAAAACAGATGAAGAATCTTTCCAAGGAGGAGTTCGTGCACATACTCCGCCGCCACAGTACTGGTTTCTCAAGGGGGAGTTCGAAATACCGGGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGAGAGGCTGTGACTAACTTTGAACCAAGTACATATGAGAGCGAGATGAAACCTGAAGCTATTAATAATGGTGGCAGTCACGATCTTGACCTCAATTTGGGCATAGCGACCCCAGGACATGGTCCCAAAGAAAACAGGGGGCATCTTCAGTTCCAGCCCCTCCCTTACAACACGCATCCCGGAAGAAGTTCAAAGATGGAGACTAATGTTAATTCGGTTATTGGTGATCCATCTTTGAAAAGGCTGGTTGTAACTGAAGAGCTTCCTGTATGGAATGCCGCATATTCCACTTTCTTTCCCAATCTGGAAAGAGCAGAGAGAATGGGCATAGATCCTTCAAAAGGAGTCCCCAACTGGGCGTGGCAAACACATGGCCAGGTTGCTGCCACCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACTTTTCCATCAACTGCCATCTTTCCAACAAAATCCATTAACTCAATTCCCCAGAGCCTCTGTTTCACTTCACCCAGCACACCAGGTAGCAATGCACCTCAATTCTATTACGAGGTGAAGTCCCCGCAAAAACCGTCCTAG 1374 0.4971 MLDLNLNAESTQNDDSFVLLDKFPEASSGTSNSSVVNAEGSSNEDSCSTRAGDMFTFNFGILKVEGTNDVVAAATTKELFPVSAESWQGQSSTSSFQARKSLMDLSVDHQNGEVKVVQVQQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYESEMKPEAINNGGSHDLDLNLGIATPGHGPKENRGHLQFQPLPYNTHPGRSSKMETNVNSVIGDPSLKRLVVTEELPVWNAAYSTFFPNLERAERMGIDPSKGVPNWAWQTHGQVAATPVPPFSTAASSGFSISATFPSTAIFPTKSINSIPQSLCFTSPSTPGSNAPQFYYEVKSPQKPS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03916 457 MobiDBLite consensus disorder prediction 118 139 - -
Pumo4g03916 457 MobiDBLite consensus disorder prediction 436 457 - -
Pumo4g03916 457 MobiDBLite consensus disorder prediction 26 47 - -
Pumo4g03916 457 SUPERFAMILY DNA-binding domain 229 273 IPR016177 GO:0003677
Pumo4g03916 457 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Pumo4g03916 457 Gene3D AP2/ERF domain 229 273 IPR036955 GO:0003700|GO:0006355
Pumo4g03916 457 Gene3D AP2/ERF domain 137 196 IPR036955 GO:0003700|GO:0006355
Pumo4g03916 457 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 95 319 - -
Pumo4g03916 457 ProSiteProfiles AP2/ERF domain profile. 138 194 IPR001471 GO:0003700|GO:0006355
Pumo4g03916 457 CDD AP2 229 274 IPR001471 GO:0003700|GO:0006355
Pumo4g03916 457 SUPERFAMILY DNA-binding domain 137 194 IPR016177 GO:0003677
Pumo4g03916 457 CDD AP2 138 193 IPR001471 GO:0003700|GO:0006355
Pumo4g03916 457 SMART rav1_2 138 200 IPR001471 GO:0003700|GO:0006355
Pumo4g03916 457 SMART rav1_2 230 278 IPR001471 GO:0003700|GO:0006355
Pumo4g03916 457 FunFam AP2-like ethylene-responsive transcription factor 137 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03916 Pumo-Chr4 79695860 79700253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03916 1 418 AP2-EREBP Transcription Factor Family AT5G60120 49.784 2.03e-100 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g03916 AP2 2.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03916 K09284 - gmx:100777102 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03916 4 79695860 79700253 Pumo4g03916 4 79695860 79700253 ECH
Pumo4g03916 4 79695860 79700253 Pumo11g01520 11 46174833 46178325 PCT