Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03902 ATGGAGAGTGAGACAAACACCCCTACTTCCTCTCCCACATTTTCTCACTCCTCTAATACCCCTTCTTCCTCCCCCCAAGTTGTCATGAGCCCTTGTGCTGCTTGCAAGATTCTGAGGCGAAGATGTGCTGAGAAATGTGTGTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCACTGCACACCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGGCCAGCATGGTTTATGAGGCTGGTGCAAGAATAAGAGACCCAGTATACGGATGTGCAGGTGCAATTTGCCAGCTCCAAAAGCAAGTCAATGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAATTCCAACAAGCCAATCTCGTGGCCCTAATTTGCATGGAAATGGCACAAACACAAACTCCACAGGAATCACCACAACAATCTGTGGACAACTTCATTTCAAGCCCTTCCCACAGCAGCGGCTATCAAAACAATCTCAATTTCTTTGAGGAGAACACCAACCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 597 0.474 MESETNTPTSSPTFSHSSNTPSSSPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQFQQANLVALICMEMAQTQTPQESPQQSVDNFISSPSHSSGYQNNLNFFEENTNLNSLWEPLWT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03902 198 Pfam Lateral organ boundaries (LOB) domain 31 128 IPR004883 -
Pumo4g03902 198 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
Pumo4g03902 198 Coils Coil 110 137 - -
Pumo4g03902 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 30 162 - -
Pumo4g03902 198 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03902 Pumo-Chr4 79486855 79489075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03902 27 198 AS2 family AT2G28500 66.486 1.44e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo4g03902 LOB 3.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03902 - - gmx:100819336 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03902 4 79486855 79489075 Pumo4g03902 4 79486855 79489075 ECH
Pumo4g03902 4 79486855 79489075 Pumo11g01507 11 45961325 45963536 PCT