Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03898 ATGCAAATACAAATTGATCACTGCCGGAGCCGGCATGCGCTAGCTTCCGGGGCCTTGCTTGCAGATTGCTCTTCGTTTTTGCTGAAGATTCTGTGCAAAATGGATTTGGTACCCAGTTGCAAGGAAAAATTGCAATATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTGGGACTTTCAAAACAGGGAAAGAAGCAGGATCTTGTTGATAGGATATTAGCTATTCTCTCAGAGGACCAAGTTTCCAAATTGTGGACCAAGAAGAATGCTGTTGGAAAACAACAGGTGGCCAAATTAGTGGATGACACATATAGAAAATTGCAGGTATCTGGTGCCATTGATCTAGCATCAAAGGGACAGGGTGCCTCGGATAGCAGTAATGTGAAAATTAAAGGTGAAATTGACGATTCCTTTCAATCAGATACGAAGATTCGCTGTCTCTGTGGAAATGTATTGGATACAGAGCCATTGGTCAAGTGTGAAGATACAAGATGCCATGTGTCACAGCACATCAACTGTGTTATTATTCCAGAGAAACCTATGGATGGAATCCCACCCGTTCCTGATAAATTCTACTGTGAAATATGTCGACTTGATCGAGCAGACCCGTTTTATGTTTCAATGACACACCTCTTGTTTCCGGTGAAGTTGACCACAACCAATATTCCCACCGATGGAACCAACCCAGTACAGAGTGTGGAAAGAACGTTTCAACTCACGAGAGCAAACAGGGAGTTAATATCAAAATCAGAATATGATGTTCAGGTTTGGTGTATGCTTTTGAATGACAAGGTTTCATTCAGGATGCAATGGCCACAATTTACAGATCTAAAGGTCAATGGTTTTCCTGTTCGTGTAATTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGTGACACTGGTCCAGTTATCACGCCATATACAAAGGACGGAGTTAATAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTTTAGGGGTCCGACTTGTTAAAAGGCTCAGCATGCCAGAGGTCCTAAGCATGATTCCAGAGGAGTCTGACGGTGAGCGTTTTGAAGATGCTCTTGCACGTGTCTGTTGTTGTGTTGGGGGTGGAAATGCAAATGATAATGCTGATAGTGATAGTGATTTGGAAGTGGTTTCAGATACTTTTAGCATCAATCTCCGTTGCCCAATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATGGGCTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATGAACGGTCAAGGAAGTGGCAGTGCCCCTTATGCCTTAAAAATTATGCTTTGGAGAATATCATTATTGACCCTTACTTCAATCGCATCACTACTCTGATGAAAAATTGTGGAGAAGAAATTGCAGAGGTCGAGGTGAAGCCTGATGGTTGTTGGCGTGTCAAGGCTAAGAATGAAAGTGAACGCCGGGAGTTGGGGACTCTTGCTCAATGGCACCGTCCTGATGGATCCCTCTTTGTTTCTACTGATGAAGTCAAGAGAATGGAAAATTTAAAGCTCAAACAGGAAGGTGTTTCAGATGGTCCTATTGGTGGTTTAAAACTTGGCATTAGGAAGAATAGTAATGGTGTTTGGGAAGTCAGCAAACCTGAGAACACAAACACTTCTTCTGGTAATAGATTGAATGAGGATTTTGAAAATCCTGAACATGTTATTATTCCGATGAGCAGCAGTGACACTGGAAGTGGCCGGGATGAAGATGATCCTAGTGTAAATCAGGGTGGTGGAGGGCATATTGATTATTCTACTACCAATGGGATTGAGATGGATTCTGTGTTTAACAATAATGTTGATTCAGCTTATGGATATACTGTTAATAACGCTTCTGCTCCGATGGGTGATGCAGAAGTTATTATTCTTAGTGATTCAGAAGAAGACAATGATGTATTGATGTCTCCTACTCCTATAACTGGGTACAAAAATAATCAAACTAGTGCTGCAATTGATGTTTACTCAGTGCTACAGCCTGGAATTATTGATCCATATACGGAAGATCACAATCCTGGTGGAAATCCAGGCTTAGAAGTTTTTAATAATCCCAGTGAAGATGATTTTGGGATTCCCTCTCTCTGGCAATCTGGAACTCCGGCAGTCTCAGGATTCCAATTATTCAGTTCTGAAGTGGAGGATGTGTCAGATGCATTGATTGATTTGCAGCATGGCAATATTAATTGCTCCTCATCACTGAATGGTTATACATTGGCTCCAGATACTGCTTTGGGATCTAGCACTCTCGTACCAGATTCCTCAGCTGGTCGACCTGATGATGATTTAAATGGTGGCTTGGTTGACAATCCACTGGCATTTCCCAGAGAAGATCCGTCCCTTCAGATTTTTCTCCCTACAAAACCAGCAGAATCATCCATGCAGCATGAATTGAGAGATCATGCAGACATGTCAAATGGCGTCTTCACTGACGATTGGATCTCTCTTAGTCTTGGAGGTGGTGCCAGTGGCTGTAATGGTGACACATCCACTGCAAATGGATTGAATTCCAGACCACAAATTACATCCAGAGAAGATGACAGAGATTCTTTGACAGATACCGCAGCTCCTTTGCTTCTTGGTATGAATGATGTTAGACCTGACAAGGCAAGTAGGCAAAGATCAGATAGCCCTTTCTCATTTCCCCGCCAAAAACGTTCAGTAAGGCCCCGCCCGTATCTTTCTATTGATTCAGATTCCGAGTAG 2748 0.4239 MQIQIDHCRSRHALASGALLADCSSFLLKILCKMDLVPSCKEKLQYFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSEDQVSKLWTKKNAVGKQQVAKLVDDTYRKLQVSGAIDLASKGQGASDSSNVKIKGEIDDSFQSDTKIRCLCGNVLDTEPLVKCEDTRCHVSQHINCVIIPEKPMDGIPPVPDKFYCEICRLDRADPFYVSMTHLLFPVKLTTTNIPTDGTNPVQSVERTFQLTRANRELISKSEYDVQVWCMLLNDKVSFRMQWPQFTDLKVNGFPVRVINRPGSQLLGANGRDTGPVITPYTKDGVNKISLTGCDARIFCLGVRLVKRLSMPEVLSMIPEESDGERFEDALARVCCCVGGGNANDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNERSRKWQCPLCLKNYALENIIIDPYFNRITTLMKNCGEEIAEVEVKPDGCWRVKAKNESERRELGTLAQWHRPDGSLFVSTDEVKRMENLKLKQEGVSDGPIGGLKLGIRKNSNGVWEVSKPENTNTSSGNRLNEDFENPEHVIIPMSSSDTGSGRDEDDPSVNQGGGGHIDYSTTNGIEMDSVFNNNVDSAYGYTVNNASAPMGDAEVIILSDSEEDNDVLMSPTPITGYKNNQTSAAIDVYSVLQPGIIDPYTEDHNPGGNPGLEVFNNPSEDDFGIPSLWQSGTPAVSGFQLFSSEVEDVSDALIDLQHGNINCSSSLNGYTLAPDTALGSSTLVPDSSAGRPDDDLNGGLVDNPLAFPREDPSLQIFLPTKPAESSMQHELRDHADMSNGVFTDDWISLSLGGGASGCNGDTSTANGLNSRPQITSREDDRDSLTDTAAPLLLGMNDVRPDKASRQRSDSPFSFPRQKRSVRPRPYLSIDSDSE 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03898 915 Pfam MIZ/SP-RING zinc finger 392 440 IPR004181 GO:0008270
Pumo4g03898 915 CDD PHD_Bye1p_SIZ1_like 147 198 - -
Pumo4g03898 915 ProSiteProfiles SAP motif profile. 44 78 IPR003034 -
Pumo4g03898 915 MobiDBLite consensus disorder prediction 544 561 - -
Pumo4g03898 915 Pfam SAP domain 46 75 IPR003034 -
Pumo4g03898 915 MobiDBLite consensus disorder prediction 544 598 - -
Pumo4g03898 915 Gene3D SAP domain 35 96 IPR036361 -
Pumo4g03898 915 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 42 680 - -
Pumo4g03898 915 MobiDBLite consensus disorder prediction 842 915 - -
Pumo4g03898 915 FunFam E3 SUMO-protein ligase SIZ1 33 99 - -
Pumo4g03898 915 SMART sap_9 44 78 IPR003034 -
Pumo4g03898 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 204 IPR013083 -
Pumo4g03898 915 SUPERFAMILY FYVE/PHD zinc finger 140 202 IPR011011 -
Pumo4g03898 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 480 IPR013083 -
Pumo4g03898 915 ProSitePatterns Zinc finger PHD-type signature. 148 198 IPR019786 -
Pumo4g03898 915 CDD SP-RING_Siz-like 393 442 IPR031141 -
Pumo4g03898 915 SMART PHD_3 147 199 IPR001965 -
Pumo4g03898 915 SUPERFAMILY SAP domain 34 97 IPR036361 -
Pumo4g03898 915 ProSiteProfiles Zinc finger SP-RING-type profile. 379 462 IPR004181 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03898 Pumo-Chr4 79410856 79420257 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03898 - K22403 gmx:100811996 1608.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03898 4 79410856 79420257 Pumo4g03898 4 79410856 79420257 ECH
Pumo4g03898 4 79410856 79420257 Pumo11g01498 11 45827269 45836313 PCT