Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03896 ATGGAAATTGATCTGAATGATGCAGTGACGACTGAGGCTGAGAAGAGTGTGTCTTGCAATGGGGAGTGTGAGAAGGGTGCTGCTTGTGTTTGCTCTTTGTCCTCTCCAACATGTTCATCTTCTGGTTCCTCCTCCGCACGTGTGTCTTCTTCTTATCTTGAGCTTTGGCACGCTTGTGCTGGCCCCCTCACTTCCCTCCCAAAGAAAGGGAATGTGGTGGTGTATTTCCCACAAGGGCACCTAGAACAAGCTGCATCTTTCTCTCCCTTTTCACCAATGGAGATGCCAACTTATGATCTTCAGCCACAGATCTTTTGTAGAGTTGTCAATATTCAGCTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGGCAGGGATGTATTTGGAGGGAAAAGAGCTTGAGGAATTGGGAGCAGATGAAGAGGGAAATGAAACAACTCCTACAAAGGCAACCCCTCACATGTTTTGCAAAACGCTTACAGCTTCAGATACCAGCACTCATGGAGGGTTCTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGACATATTTACAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCAGTTCTCTTTCTAAGGGGTGAAAATGGGGAATTGAGATTAGGAATCCGAAGAGCTGCTCGACCAAGAAACGGTCTTCCTGAATCAATTATTGGTAGCCAGAGTTATTTTCCAAATTTCCTTTCTTCTGTGGCTAATGCTATATCCGCGAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCGGATTTTGTTGTGCCCTACCAAAAATATATCAAAAGCATCAAGAATCTGGTGACCATTGGGACAAGGTTCAAAATGAAATTTGAAATGGATGAATCTCCGGAAAGAAGGTGTACTAGTGGTATGGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCCAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGATTAATCATCAAGATAGAGTATCTCCATGGGAGATTGATCCTTCTGTGTCTCTCCCTCCCTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTGCAGGCCGCCGCACCCAGTCACCTCACCACTGCAGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCAGTAAGATCATCCAAGGTCTTGCAAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCATCCTAATCTTGCATCAACTGGAGTGAGAAAGATTTCTGCTGCTGAGTTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTCACGGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTTAGATCCCTGACAGGAAAGGTTGATTTGAACTTCGGTTCATGGGGCAAACCCAATGTCAGTTGCACAAATTACAATCTGCATCAGGCAACCAAACCTAATTTTCACTCTTTAGGACCAGAAGTTATTCAAACTGCATATTTTCCCTATGCTGATATTCACAAAGCTGGCCAAGGAAGCGGCATGTTGTGCTCTAAACCCATCAATTTCCAACGAGAGAATGTCCCATTTAACACTCCTTCCACTCAGTCAGGGATCATGAGAAATGAAGTTGGACGGTCCGATGTAACAATCCCAAATGAGCAGAAGCTGGAGGACAATATTTCTGGTGCTGCTTCTTTAGGGGCAAACATGAGGATTCCCAATGATGACAATTTCAAGGGGAAGGTAAATGCTTGTAAACTATTTGGATTTTCCTTGTCTGGGGAAACCACCACCCAAAATTTACAGAACTCTGCCAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGATTGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAAGAGATCCTAATAAGGGATGGAGAATCCTCTACACTGACAGTGAAAATGACATTATGGTTGTGGGGGATGACCCGTGGCATGAGTTCTGCGATGTGGTATCCAAGATTCATATACATACACAAGAAGAAGTGGAGAAGATGACAATAGGGATGATCAATGATGATACCCAGAGTTGTTTGGAACAGGCACCAGTGATAATGGAGGCTTCAAAGTCTTCCTCTGTGGGTCAGCCAGATTCTTCTCCAACAGTGGTTAGAATGTAG 2373 0.4454 MEIDLNDAVTTEAEKSVSCNGECEKGAACVCSLSSPTCSSSGSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPFSPMEMPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMYLEGKELEELGADEEGNETTPTKATPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIIGSQSYFPNFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYIKSIKNLVTIGTRFKMKFEMDESPERRCTSGMVTGMSDLDPYKWPKSKWRCLMVRWDEDIEINHQDRVSPWEIDPSVSLPPLSIQSSRRLKKLRPGLQAAAPSHLTTAGGSGFMDSEESVRSSKVLQVTKQPEFEIRSPSHPNLASTGVRKISAAEFMRVHPSSYAGFTETNRFPRVLQGQEICPFRSLTGKVDLNFGSWGKPNVSCTNYNLHQATKPNFHSLGPEVIQTAYFPYADIHKAGQGSGMLCSKPINFQRENVPFNTPSTQSGIMRNEVGRSDVTIPNEQKLEDNISGAASLGANMRIPNDDNFKGKVNACKLFGFSLSGETTTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLIELERLFSMEGLLRDPNKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIHTQEEVEKMTIGMINDDTQSCLEQAPVIMEASKSSSVGQPDSSPTVVRM 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03896 790 ProSiteProfiles B3 DNA-binding domain profile. 166 268 IPR003340 GO:0003677
Pumo4g03896 790 Gene3D - 658 751 - -
Pumo4g03896 790 Pfam B3 DNA binding domain 166 267 IPR003340 GO:0003677
Pumo4g03896 790 FunFam Auxin response factor 164 268 - -
Pumo4g03896 790 MobiDBLite consensus disorder prediction 418 438 - -
Pumo4g03896 790 Pfam AUX/IAA family 654 746 IPR033389 -
Pumo4g03896 790 SUPERFAMILY CAD & PB1 domains 665 742 - -
Pumo4g03896 790 ProSiteProfiles PB1 domain profile. 662 744 IPR000270 GO:0005515
Pumo4g03896 790 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 751 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo4g03896 790 SMART B3_2 166 268 IPR003340 GO:0003677
Pumo4g03896 790 FunFam Auxin response factor 657 751 - -
Pumo4g03896 790 CDD B3_DNA 164 266 IPR003340 GO:0003677
Pumo4g03896 790 Gene3D - 330 402 - -
Pumo4g03896 790 SUPERFAMILY DNA-binding pseudobarrel domain 158 277 IPR015300 -
Pumo4g03896 790 Gene3D - 164 268 IPR015300 -
Pumo4g03896 790 FunFam Auxin response factor 329 402 - -
Pumo4g03896 790 Pfam Auxin response factor 292 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03896 Pumo-Chr4 79396981 79402073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03896 48 790 B3 DNA Binding Superfamily AT5G60450 60.444 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo4g03896 AUX_IAA 6.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03896 - - gmx:100812909 1454.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03896 4 79396981 79402073 Pumo4g03896 4 79396981 79402073 ECH
Pumo4g03896 4 79396981 79402073 Pumo11g01495 11 45806511 45812574 PCT