Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03893 ATGTCCGTCATCGACATTCTCTTCCGCGTCGACAACATATGTCACAAATATGACAAATACGACATCGATAAGCAGCGCGAGCTCAACGCCTATGGCGACGACGCCTTCGCCCGCCTCTACGCTGCTGTTGAATCCAACATTCAATCCGCTCTCAATGTTCCATTCTCTTCCCTCTCCTTCGTTTGCTCTCTCTCCATTGCTTTTGTTATTGAGATTGACGTTTTTATTACAATGCAGAAATCGGAGCTTGCTCTCACGGAGCAGAACAGGGCAGCTGCTGCGGCTTTGAATGCAGAGGTTCGTCGAACCAAGGGTAGACTCATGGACGAGATTCCTAAACTCCGCAAATTGGTGCACAAGAAGGTTAAAGGTCTCACAAAAGAGGATATGGCCGTTCGTCAGGATCTTGTTCTGGCATTGCCGGAGAGAATCCAAGCAATACCAGATGGTATTACTGGTGCTGCTATTCAAACTGCAGGATGGACCGCTACCTCATCTCAGCCGCATATCAAGTTTGATTCATCAGACGGACATCATGACAGTGAGTATTTCCAGCAAAGTGAAGAATCCAGTCAGTTTCGACAAGAGTATGAGATGCGCAGGATGAAACAGGATGAAGGGCTTGATATCATATCAGAGGGATTGGATACCTTGAAGGATCTGGCCCAAGATATGAATGAGGAATTGGATCGGCAAGTTCCTTTAATGGATGAAATTGACACAAAGGTGGATAGGGCAACAGCTGATGTGAGAAACACTAACGTAAGGCTGAAGAACACTCTCACTGAGATAAGGTCTAGTCGAAATTTCTGCATCGATATCATTCTGCTCTGTGTTCTTCTTGGAATCGTTATGTATTTATACAATGCTCTGAGGTGA 879 0.4562 MSVIDILFRVDNICHKYDKYDIDKQRELNAYGDDAFARLYAAVESNIQSALNVPFSSLSFVCSLSIAFVIEIDVFITMQKSELALTEQNRAAAAALNAEVRRTKGRLMDEIPKLRKLVHKKVKGLTKEDMAVRQDLVLALPERIQAIPDGITGAAIQTAGWTATSSQPHIKFDSSDGHHDSEYFQQSEESSQFRQEYEMRRMKQDEGLDIISEGLDTLKDLAQDMNEELDRQVPLMDEIDTKVDRATADVRNTNVRLKNTLTEIRSSRNFCIDIILLCVLLGIVMYLYNALR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03893 292 FunFam Putative syntaxin-71-like 198 259 - -
Pumo4g03893 292 SUPERFAMILY SNARE fusion complex 191 259 - -
Pumo4g03893 292 CDD SNARE_Qc 203 258 - -
Pumo4g03893 292 Pfam SNARE domain 235 284 IPR000727 -
Pumo4g03893 292 Gene3D - 198 259 - -
Pumo4g03893 292 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 198 260 IPR000727 -
Pumo4g03893 292 ProSitePatterns Syntaxin / epimorphin family signature. 204 243 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pumo4g03893 292 PANTHER SYNTAXIN 93 280 IPR045242 -
Pumo4g03893 292 SMART tSNARE_6 193 260 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03893 Pumo-Chr4 79335490 79338122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03893 1 292 SNARE and Associated Proteins AT3G09740 62.245 1.46e-133 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03893 K08506 - gmx:100777251 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03893 4 79335490 79338122 Pumo4g03893 4 79335490 79338122 ECH