Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03892 ATGGAGGGAGATCAACAGGGCTCTAGTTACTCTTTTCCACCTGGCTTCAGGTTCCACCCTTCAGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAGTTCACGTCCACTTCCAGCATCCATTATAGCTGAAATTGATCTGTATAAGTATAACCCGTGGGAGCTACCAAATAAGTCCTTGTTTGGGGAGGAAGAGTGGTATTTCTTTAGCCCCAGAGACAGGAAGTACCCAAATGGATTGAGGCCAAACAGGGCTGCAGCCTCAGGATACTGGAAGGCAACTGGAACTGACAAGCCAATTCTTTCTTCTTGCGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTGTTCTATTCAGGTCGACCTCCTAAGGGTGCTAAGACTGATTGGATAATGAATGAGTATAGATTGGTTGACACAACCACCACATCCTCCAGGCTAAAAGGCTCCATGCGGTTGGATGACTGGGTACTATGCCGGGTTCGACATAAAGGCTACTCTCCTAAGAATTCATGTGAAAATCAAGAGAGTCCTAGTGAACTAAACTTGTCAGGAAAACTACCGAGGAGTGAAGAATACCCAACAAACATGAACTGTCGGGCTGACATGATCCCTGATTATCAATACAAAGACTATCAAATCATAGCCTCTATTCTTGTTGGTGGACCTATACCTACCACTGAAAACATGCCAAATCTGAGCTTTAAGGGCTGCAAAGGCAACAATCTAGCATCAGTTTATGAAGATGGTTTCACTAAAGTGAATTCTCAAACGACGATTCCTTCTTTGGAAAGTTACTTCAACCCACTGACAAGAAAATCTAATGAAGATGAACAGTATGCAAATCTCATTTCTTTTAACGGGAAGTTCAACACTGAGAACAAAATCGATGAATCTCCTAGCAAGGTGTTGACCAGTAGAGAGTTGAACTGCTATAACCAAAATCAGTCTCAAGATGTCATTTTCAATGGGAACCCACCAGATCCTAGCATCAATTTTCAAGAGCTAAACGAATTAGCCTTTACAGGAAGGTACCCTCAGTGA 1050 0.4257 MEGDQQGSSYSFPPGFRFHPSDEELIVHYLQNKISSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSCGSKRIGVKKALVFYSGRPPKGAKTDWIMNEYRLVDTTTTSSRLKGSMRLDDWVLCRVRHKGYSPKNSCENQESPSELNLSGKLPRSEEYPTNMNCRADMIPDYQYKDYQIIASILVGGPIPTTENMPNLSFKGCKGNNLASVYEDGFTKVNSQTTIPSLESYFNPLTRKSNEDEQYANLISFNGKFNTENKIDESPSKVLTSRELNCYNQNQSQDVIFNGNPPDPSINFQELNELAFTGRYPQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03892 349 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Pumo4g03892 349 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
Pumo4g03892 349 MobiDBLite consensus disorder prediction 169 196 - -
Pumo4g03892 349 MobiDBLite consensus disorder prediction 172 186 - -
Pumo4g03892 349 FunFam NAC transcription factor 21 169 - -
Pumo4g03892 349 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Pumo4g03892 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 273 - -
Pumo4g03892 349 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03892 Pumo-Chr4 79332549 79334593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03892 12 175 NAC Transcription Factor Family AT1G61110 66.860 2.00e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g03892 NAM 5.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03892 - - gmx:100817193 680.633