Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03891 ATGATGTCTGAAGAAGCAATATATGTTCCTTCCAATCTCAGAGACTCCTCGGTTCAACTTCATGAACCAAACTCAAACTCAAACCCTAATCCTAACCCTAATTCAGTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCACTGATGGCTACGAACCGGTTCATCTGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAACTTGCCGTGGAAGCTGCGGCAGAGAACGAAGGACGAGGTGGTGAAGAAGAAGGTGTATGTTTGTCCAGAGAAGAGTTGTGTGCACCATGACCCTTGCAGAGCCCTTGGAGACCTCACTGGGATAAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTCGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCCTTTTGTGATGCCATGGTGGAGCAAAGTGCGAGACTTCCATCAGTTTTATCAAACCTTGGAAGCGAGATTTTGATGAACGCTCAAGCTTCAAGAGTAATGCCTCAGGGTTTACAATTACATGGGTTTCATTCAGAGTTTGGTGGGCCAGGCCCAGAACCATACATGGGGGATTTTGCGGATGTGAACCATGAGCATAAGCTAAGGATGCCACTATGGCTAGACCAGACCAATAATCCTCTTCAGCTTAATCATCCTCTAAGCGTTTCAAGCAACTCTTCAAGTTTGTTCGCACCAGGAACAACAACCTTGGCTGAAGCAAACAACATGTTTGGGACATCATCGTCGCAGGGACAGTGGCTGAATTACCGATACCCAGAAGCATCGTTTACACATGCCAATGTTTCTATGCCTCATGGACTGAAGCTAGAGCAAGAAGAAAACAAAGGGGACTTGTCGCATACTTTGTACCCAAGTCACATGGAATCTACAAGGATGAGTGGTAACTTCGACAACTCCAACTTTGGCTTGTTGGACCCGAACATGTCAAGAACGTCCTTCAGCAACAACAACAACGTGGTTGAAATTCAGAAATTATTCAAGCACGGAAACCAGGCTGAGAACTTCAACCTCATGGTGAATTCCCAAGCAAGCACAAACATTGGAGGCGGGTTTTCACTGAGTAGCACGAAGAGTTTGGAGCATATGGCGGTGATGCCGCGGATTGAAGAGTGGGAGAGTGGAGAACCAGAAATAATGGAGAAGCAGCTACATTCAAGTTCAAACACTGAAGAACACTTAACCAAAGACTTCATGGGTGTTGGAGATGGCACTTTAAGCAGACAAATGGGACCAGTCATGAACCTGCAAAGCCAGTTCCGTGGACATTACTGA 1458 0.465 MMSEEAIYVPSNLRDSSVQLHEPNSNSNPNPNPNSVKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRTKDEVVKKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSARLPSVLSNLGSEILMNAQASRVMPQGLQLHGFHSEFGGPGPEPYMGDFADVNHEHKLRMPLWLDQTNNPLQLNHPLSVSSNSSSLFAPGTTTLAEANNMFGTSSSQGQWLNYRYPEASFTHANVSMPHGLKLEQEENKGDLSHTLYPSHMESTRMSGNFDNSNFGLLDPNMSRTSFSNNNNVVEIQKLFKHGNQAENFNLMVNSQASTNIGGGFSLSSTKSLEHMAVMPRIEEWESGEPEIMEKQLHSSSNTEEHLTKDFMGVGDGTLSRQMGPVMNLQSQFRGHY 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03891 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 469 IPR031140 -
Pumo4g03891 485 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Pumo4g03891 485 FunFam protein indeterminate-domain 12-like 45 114 - -
Pumo4g03891 485 MobiDBLite consensus disorder prediction 1 49 - -
Pumo4g03891 485 MobiDBLite consensus disorder prediction 10 39 - -
Pumo4g03891 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Pumo4g03891 485 SMART c2h2final6 143 163 IPR013087 -
Pumo4g03891 485 SMART c2h2final6 108 138 IPR013087 -
Pumo4g03891 485 SMART c2h2final6 66 88 IPR013087 -
Pumo4g03891 485 Gene3D Classic Zinc Finger 45 118 - -
Pumo4g03891 485 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Pumo4g03891 485 Gene3D Classic Zinc Finger 121 200 - -
Pumo4g03891 485 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Pumo4g03891 485 ProSiteProfiles IQ motif profile. 470 485 IPR000048 GO:0005515
Pumo4g03891 485 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03891 Pumo-Chr4 79304413 79307212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03891 9 200 IDZ Gene Family AT3G50700 75.635 1.24e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g03891 zf-C2H2_jaz 8.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03891 K25870 - gmx:100811687 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03891 4 79304413 79307212 Pumo4g03891 4 79304413 79307212 ECH
Pumo4g03891 4 79304413 79307212 Pumo11g01490 11 45710860 45714339 PCT