Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03889 ATGCGAGGACCGGAAAGGAGAGGGTTCGGTTCCTTTGAGTTAGAGCAGCTCAGTGCGATTCTTTTCCACCCCGTAGCACTCATATATGTCTACGCGCCTTTTTTCTTTCGCATAACGGTTTTTCAACAAACTGAGATATTTACTATTATGCCACATGCAAATACGGACAAAAGGGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATGTTCTTAGTCAAAGCTCAACATCTAAAAGTAAAAATAATGAAATGAATAATGGAATTGGTGCAAATGATGCCAAGTGGCTGGCTCGATCCTTGTTTGTCAAGAACCTAAATTTCAAGACAACAGATGAGGGTTTGAAGAAACATTTTAGTGAGCACATGAAAGAGGGAGCAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAATACTGGGAAAATGTTTCCGTGGGGTTTGGATTTTTTGAGTTCGACTCCATGGAGACTACTACAAATGTTTGCAGAGATTTACAGGATACTGTTCTGGACAGGCATGCTCTTAGTTTACGTTTTTGTTGTGTCAAGAATGAGGGACAAGTTCTAAAGACAGTTGAGAAGGACAAGAGTTCTACAAAATTGATTGTAAAAAATGTTGCTTTTGAGGCAACAAGGAAGAGTCTGAGAGACTTGTTTGAGTTGTTTGGCAAGATTAAAAGCGTAAGGTTGCCAGTGAGGTATGGACGTCATAGAGGCTTTGCTTTTGTAGAGTATGCTACTCAGCAGGAGGCAGAAAATGGTCTTGCAACATTTAAACGAACCCATCTGTTGGGTAGGCGTATGAGGATAGAGAGAGCAAACGGTGATGAGAGTCTGGATGAGAAGCGGGCTCGAACAGCTGTTCAATTTAGTGGACATAATGGATTTCAAAATGCTACCAAGTTATCCAAGAAAAGGAAGCACAACAGTGTCTTAGATGAAAGGATACTTTATTAG 957 0.4075 MRGPERRGFGSFELEQLSAILFHPVALIYVYAPFFFRITVFQQTEIFTIMPHANTDKRDAPLYLEWAPSNVLSQSSTSKSKNNEMNNGIGANDAKWLARSLFVKNLNFKTTDEGLKKHFSEHMKEGAILSVKVKKHLKYWENVSVGFGFFEFDSMETTTNVCRDLQDTVLDRHALSLRFCCVKNEGQVLKTVEKDKSSTKLIVKNVAFEATRKSLRDLFELFGKIKSVRLPVRYGRHRGFAFVEYATQQEAENGLATFKRTHLLGRRMRIERANGDESLDEKRARTAVQFSGHNGFQNATKLSKKRKHNSVLDERILY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03889 318 Gene3D - 98 184 IPR012677 -
Pumo4g03889 318 SUPERFAMILY RNA-binding domain, RBD 194 277 IPR035979 GO:0003676
Pumo4g03889 318 SMART rrm1_1 100 178 IPR000504 GO:0003723
Pumo4g03889 318 SMART rrm1_1 200 271 IPR000504 GO:0003723
Pumo4g03889 318 SUPERFAMILY RNA-binding domain, RBD 96 184 IPR035979 GO:0003676
Pumo4g03889 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 268 IPR000504 GO:0003723
Pumo4g03889 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 175 IPR000504 GO:0003723
Pumo4g03889 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 275 IPR000504 GO:0003723
Pumo4g03889 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723
Pumo4g03889 318 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 143 304 - -
Pumo4g03889 318 Gene3D - 185 286 IPR012677 -
Pumo4g03889 318 CDD RRM6_RBM19_RRM5_MRD1 199 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03889 Pumo-Chr4 79260331 79269872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03889 91 291 Eukaryotic Initiation Factors Gene Family AT4G34110 28.169 2.87e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03889 K14787 - gmx:100796243 336.65