Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03885 ATGGGAGATTATAAGAGTTTTTCATTTACCAAAATGATGGGCTGCTGTGGTTGCTTCGGATTTGTCAAAAAACCAAGACGGCGTCGGGCTAAACGTAGCATCAGTAATTTTCTCTCCCAGGGGCTATTATTGGATGGAGAAACTGAAGGTGAAGGTGATGAGACATATAGTGGTGAGGTTACTAGTAACTGCACCAGTGGAGATGATAATGAGGTGCAAGCTGTACGCAACCGTTCAGAGGATATTTTGAACTTTAGAGCTGAGAATGGCATGGTTTGTAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGATCGCTCAGAGGATGAAAATGGGTACAAGATGATAAATGAATATGTTCGAGAGTATAAAATTGGTTCTGGAAGCTATGGCAAAGTGGCTCTTTATCGAAGTTGTGTTGATGGAAAGCATTATGCAATTAAGTCCTTTCACAAGTCTCATTTACAAAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAGGTACTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCAGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTCCATGGAGATATAAAACCTGATAACCTGTTGATTACTCGTCATGGCACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGGCAATGATGAACTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACATATCACGGTAAAGCTTCTGACACATGGGCAGTAGGAGTTACTCTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAATAGTCAATGATCCCTTAGTTCTGCCAGATGACATTAACCCCCAGTTAAAGAACTTAATAGAAGGATTACTATGCAAAGACCCAGAACTAAGGATGACATTGGGCGATGTTGCTGAGCATATCTGGGTTATTGGCGATGATGGCCCAATTCCTGGGTACTTATGTTGGTGCAAACGAAAGAGCATGGTGACTGAAGATTCTGATGGGAGCGATATACTTGCTTGA 1236 0.4191 MGDYKSFSFTKMMGCCGCFGFVKKPRRRRAKRSISNFLSQGLLLDGETEGEGDETYSGEVTSNCTSGDDNEVQAVRNRSEDILNFRAENGMVCRPFPVKETCKLDRSEDENGYKMINEYVREYKIGSGSYGKVALYRSCVDGKHYAIKSFHKSHLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPDDINPQLKNLIEGLLCKDPELRMTLGDVAEHIWVIGDDGPIPGYLCWCKRKSMVTEDSDGSDILA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03885 411 Gene3D Phosphorylase Kinase; domain 1 113 216 - -
Pumo4g03885 411 FunFam Serine/threonine-protein kinase Ssp1 113 215 - -
Pumo4g03885 411 FunFam Serine/threonine-protein kinase GRIK2 109 409 - -
Pumo4g03885 411 ProSiteProfiles Protein kinase domain profile. 119 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03885 411 Gene3D Transferase(Phosphotransferase) domain 1 218 386 - -
Pumo4g03885 411 SMART serkin_6 119 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03885 411 Pfam Protein kinase domain 119 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03885 411 MobiDBLite consensus disorder prediction 46 69 - -
Pumo4g03885 411 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 76 382 - -
Pumo4g03885 411 CDD STKc_LKB1_CaMKK 125 380 - -
Pumo4g03885 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Pumo4g03885 411 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Pumo4g03885 411 MobiDBLite consensus disorder prediction 55 69 - -
Pumo4g03885 411 SUPERFAMILY Protein kinase-like (PK-like) 115 388 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03885 Pumo-Chr4 79199098 79204440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03885 125 387 CBL-interacting serine-threonine protein kinases AT5G35410 33.460 4.05e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Pumo4g03885 Pkinase 2.2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03885 K00908 - gmx:100776013 806.979