Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03882 ATGAGTGCTCACCAAAAAGAAAAGCATAACGCGCCTTCGTCCAAATCAACGCCAACGGTTTCTCATCCACTTCACAAGGTGGATGATCCAATGGGGGTAACCGATGAAAATGAAGCCTTGCGTGTTAACAATCATTGGAAGCGACAGAATCTTCAGCTGGAAATACCGGCCAGAACATCAGAAGAGTCTTCTCAGGATTTCGTTGGAATAAGGATGCCGCTGACACCAAGTCCAACTCCTAGTCAGAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAAGGCCTCCTTCATCATCCAGAGCCAAATCATCCATGAGAAGCATCTTACCGAAATTCGGCTTCAGGAATCGTGCATCGCTTGATGTTGAAAAGGGTGTTACTGCTGCTCCAGAAGGATCCTTCTCTGGCCATCAAGAGAAGTCCTCAATCTCAAGATCAGTGTCTCTCACGAAGATATTCACTCCTAAGATTAAGAGAACGTCTTCGTTACCAGTAGAAGAACTTGGGCGTGCAAACGTAGAATCTGCTCTGTGTGGAAGCCTTGGTTTTTCTCCATGTGAAAGAGAGACCCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTTAATACCAAAGAAAAAGGCCTAAGGAGAATGGATTCGGTTTTCCGCATTGTTCCTTCCACTCCTCGCGTAAATGAAGTAAATGAAACAACAAAGGATACTGAAAATGGTGATGATGGTGAAGATATTGGTGAAGAGGAAGCCGTGTGTAGAATTTGTCTGGTTGAGCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAGGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCTGTCACTCTCCTACGGATCCGAAGTGTTCGTACTCAGAATACTGGAGCAAGGTCCGAGCAGGGAGATGACTTCAGGGCTTGGCAGGAACTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAGAATGGGAACCAAGGCAATTTTCATCTCTCTTCCGTTTGCCTGTGTACTGGGTCTACTCTCCTCCGTAACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAATTTGTTTTGGTGGTCATATTCGCCCACATATTTTACCCCTTGGTTGGTAATCATGCGGTTTTGTCAATCCTTCTTGCAACATTTGCTGGGTTTGGTGTGGTGATGAGTGGAAGTTCAATTCTTTTGGAGTCTTCTAGATGGAGAAGAAGATGGCAAGCTTTATCAGTGCAGCAGCGTGGTTCTTCAGCGATGACACAAGAAGGGCTATCAAATCAGAGCTGA 1428 0.4587 MSAHQKEKHNAPSSKSTPTVSHPLHKVDDPMGVTDENEALRVNNHWKRQNLQLEIPARTSEESSQDFVGIRMPLTPSPTPSQKRVNFLVTSRSVDAPRPPSSSRAKSSMRSILPKFGFRNRASLDVEKGVTAAPEGSFSGHQEKSSISRSVSLTKIFTPKIKRTSSLPVEELGRANVESALCGSLGFSPCERETQGMIARSRSVPVNTKEKGLRRMDSVFRIVPSTPRVNEVNETTKDTENGDDGEDIGEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVRTQNTGARSEQGDDFRAWQELPVLVIVSMLAYFCFLEQLLVGRMGTKAIFISLPFACVLGLLSSVTSSTMVKSRFIWIYASVQFVLVVIFAHIFYPLVGNHAVLSILLATFAGFGVVMSGSSILLESSRWRRRWQALSVQQRGSSAMTQEGLSNQS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03882 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 310 IPR013083 -
Pumo4g03882 475 SMART ringv_2 254 303 IPR011016 GO:0008270
Pumo4g03882 475 CDD RING_CH-C4HC3_MARCH 255 303 - -
Pumo4g03882 475 MobiDBLite consensus disorder prediction 44 66 - -
Pumo4g03882 475 SUPERFAMILY RING/U-box 251 306 - -
Pumo4g03882 475 MobiDBLite consensus disorder prediction 28 43 - -
Pumo4g03882 475 MobiDBLite consensus disorder prediction 1 82 - -
Pumo4g03882 475 PANTHER OS02G0165000 PROTEIN 9 467 - -
Pumo4g03882 475 ProSiteProfiles Zinc finger RING-CH-type profile. 247 309 IPR011016 GO:0008270
Pumo4g03882 475 Pfam RING-variant domain 255 302 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03882 Pumo-Chr4 79160654 79164521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03882 243 309 C3H Transcription Factor Family AT2G37950 44.118 2.60e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03882 - - gmx:100815599 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03882 4 79160654 79164521 Pumo4g03882 4 79160654 79164521 ECH
Pumo4g03882 4 79160654 79164521 Pumo11g01470 11 45167673 45173971 PCT