Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03879 ATGTTTACAATGCGATTGCTATGGGGGCTAAGGCTGCCCCTACTCATACTGATTCAACTTTTATACCCCAACAAATCAACCTACCAATTATACGTTGAGGCTTTGTTCACTTTCAAGGGTTCTATTGGAGGTCCACAACAATTCGGATGCAGCATTGTGAAATATCCATGTCAAATGCCATGGCCTTGTCTTGACTGCTATAAACTAAAAGATCCAGGTGGAATAGCAGCAAAGATAGATGGGAATAATGACATTCCAACACTTACACCACTTCAAGAAACTCAAGTTAGAAAACCAGGAGGAAGAAGGACTGCTGCCATAATTGGCAGCGTTATTGCTGCCTTAGTAGTCATTGTCATTGTGGTGACTGTCTATATCTGCTTGATGCGTATTAAAAGATTTATGAGGCAAACATCTGAGATTGCTTCTTCTATGCCATCTCCCACTGGTGGGTTTGGTTTTGTATACAAGGGCTTGCTTCAAGATGGTTCTATTGTGGCTATAAAAAGGCGTCTATTTGCTCTGACCCAAGATTTCGTCCTTGAGGTGAAGCAGATAGCTCATATTCACCACCTGCATCTTGTGAAGCTTATAGGCTATTATGAAGATAGCTATCAACAATTACTTGTGTATGAATACCTCCCTAACGGCAATGTAGGGAGTCACCTATATGACAGTGAAGGTTTACCTATTGGAAGGTTAGACTTGTGGCGAAGGATATCTATTGCTTTAGGCGCGTCCACAGGTGTGGAACATCTTCACAGTTTGGTCCCTCCTTTGGTTCACACCAATTTTAGAACTAGCAATGTTCTGTTAGATGAAAATTATACGGCCAAGGTTTCTGATTATGGATTCTGCAAATTGCAAACACAAGTTGATCAGGCTGGCTCATCTTCAAATGTAGACTGCTTTCTTGACCCAGAGTTGAGCTTTCCACAAAACTATTCGGAGAAGAGTGATGTATACAGTTTCGGGGTCTTCCTACTAGAGTTGATTAGTGGGTGTGAAGCACATAACAAAAACATGTCACACCCTGATGAAAATATAGTATTTCAGGCAAAAAATATCGTTGACTTGGACAAGTTTGTTGACATAACGCTCGGAGACCAAGAAAAGCATGGTGCTAGACGAATGTTGAAGTTGGCATTGCTATGTGTGGATGTGACTAGTAGAAGACCATCAATGGCGCAAATTGTACAAGAGCTGGAGCGGATTCAAAGAGAAATTGCTCCTATCTATTCTCAATTCAACGAGGAGATTGGTGCCGTGACACTTGGGAATCTCTCTTCTCTTTCTGCAATTCCATTGTTGTTCCCTTCACTCTCACAATGCGAATCCTCGTGGTGCTCTCCCTCGCCACCCTCCTCCTCTTTCTCCTCCTTCTCCCCCACCCTCTGCGGCGACACCGCCGACGACGAGGACCTCAGCTTCCTCGACGACGAGACCTCCGCCGCGCCGGAGCAAGATCACCACTACGGCGATGACGACAATTTCGGCGACTTCGCGGACTTCGAGGAGGACCCAGAGGCGTACAAGCTGCCCGAGGTGGACGAGAAGGACGTCGTCGTTTTGAAGGAGAAGAACTTCAGCGACGTCATCAAGAACAACCGCTTCGTCATGGTCGAATTCTACGCGCCCTGGTGCGGCCACTGCCAGGCCCTCGCCCCCGAGTACGCCGCCGCCGCCACCGAGCTCAATGGCGAAGATGTCATTTTGGCGAAGGTGGATGCCACCGAGGAGAATGAATTGGGCCAGCAGTACGATGTTCAGGGTTTCCCCACTGTCTACTTCTTCATTGATGGCGTTCACAAGCCTTATAATGGCCAAAGGACCAAAGATGCTATAGTGACGTGGATTAAGAAGAAGATCGGACCTGGTATATACAACGTCACTACAGTGGAGGATGCTCAACGCATTTTGACCAACGAAACTAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTTGGTCCTGAGAGTGAGGAGTTTGCTGCTGCTTCAAGGCTTGAGGATGATGTCAATTTCTATCAAACTGTGAATCCTGATGTGGCAAAGCTTTTCCATTTTGACCCAGATGTTAAGCGCCCAGCTTTGATCCTTGTCAAGAAAGAGGAGGAAAAAATTAACCACTTTGATGGCAAATTTGAGAAGTCAGCGATAGCAGACTTTGTCTTTTCCAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCATCAGTCTTTGAAAATCCGATCAAGAAACAGGTGTTGCTGTTTGCGACTTCAAATGATTCAGAGAAGTTAGTCCCAGCATTTCAAGAAGCAGCAAAATCTTTCAAGGGAAAGTTGATCTTTGTATATGTGGAAATGGATAATGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTATCAGTGGGAATGCTCCAAAAGTACTTGGATACACTGGGAATGACGATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTGCTGACAAAATTAAGGCATTCGGGGAAGATTTCCTTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGTAATGATGGTGATGTGAAAATAGTAGTCGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTTGAGATTTATGCTCCCTGGTGTGGCCATTGCCAAGCACTGGAGCCAATATACAACAAGCTTGGAAAACATCTTCGTGATATTGAGTCTCTTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAGCCTGATGGATTCCCCACTCTTCTCTTCTTCCCAGCAGGAAACAAGAGTTTTGACCCTATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCAACCTCAACTTCTGAGTCCGAGAGCTCTGATGTCAAGGGGAGCTCTGATACCAAAGAGAGCCCGAGCAGCAATAGTGATGTGAAGGATGAATTATGA 3018 0.4463 MFTMRLLWGLRLPLLILIQLLYPNKSTYQLYVEALFTFKGSIGGPQQFGCSIVKYPCQMPWPCLDCYKLKDPGGIAAKIDGNNDIPTLTPLQETQVRKPGGRRTAAIIGSVIAALVVIVIVVTVYICLMRIKRFMRQTSEIASSMPSPTGGFGFVYKGLLQDGSIVAIKRRLFALTQDFVLEVKQIAHIHHLHLVKLIGYYEDSYQQLLVYEYLPNGNVGSHLYDSEGLPIGRLDLWRRISIALGASTGVEHLHSLVPPLVHTNFRTSNVLLDENYTAKVSDYGFCKLQTQVDQAGSSSNVDCFLDPELSFPQNYSEKSDVYSFGVFLLELISGCEAHNKNMSHPDENIVFQAKNIVDLDKFVDITLGDQEKHGARRMLKLALLCVDVTSRRPSMAQIVQELERIQREIAPIYSQFNEEIGAVTLGNLSSLSAIPLLFPSLSQCESSWCSPSPPSSSFSSFSPTLCGDTADDEDLSFLDDETSAAPEQDHHYGDDDNFGDFADFEEDPEAYKLPEVDEKDVVVLKEKNFSDVIKNNRFVMVEFYAPWCGHCQALAPEYAAAATELNGEDVILAKVDATEENELGQQYDVQGFPTVYFFIDGVHKPYNGQRTKDAIVTWIKKKIGPGIYNVTTVEDAQRILTNETKVVLGFLNSLVGPESEEFAAASRLEDDVNFYQTVNPDVAKLFHFDPDVKRPALILVKKEEEKINHFDGKFEKSAIADFVFSNKLPLVTIFTRESAPSVFENPIKKQVLLFATSNDSEKLVPAFQEAAKSFKGKLIFVYVEMDNEDVGKPVSEYFGISGNAPKVLGYTGNDDGKKFVLDGEVTADKIKAFGEDFLEDKLKPFYKSDPVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYNKLGKHLRDIESLVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASIPFKLQKPTSTSESESSDVKGSSDTKESPSSNSDVKDEL 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03879 1005 Gene3D Glutaredoxin 624 723 - -
Pumo4g03879 1005 Gene3D Glutaredoxin 509 623 - -
Pumo4g03879 1005 NCBIfam protein disulfide-isomerase domain 524 622 IPR005788 GO:0003756
Pumo4g03879 1005 SUPERFAMILY Thioredoxin-like 628 738 IPR036249 -
Pumo4g03879 1005 CDD PDI_b_family 627 726 - -
Pumo4g03879 1005 SUPERFAMILY Protein kinase-like (PK-like) 149 414 IPR011009 -
Pumo4g03879 1005 PANTHER PROTEIN DISULFIDE ISOMERASE 514 1002 - -
Pumo4g03879 1005 Gene3D Glutaredoxin 854 967 - -
Pumo4g03879 1005 ProSiteProfiles Protein kinase domain profile. 141 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03879 1005 FunFam Protein disulfide-isomerase 510 622 - -
Pumo4g03879 1005 Pfam Thioredoxin-like domain 658 833 - -
Pumo4g03879 1005 MobiDBLite consensus disorder prediction 972 995 - -
Pumo4g03879 1005 FunFam Protein disulfide-isomerase 728 853 - -
Pumo4g03879 1005 ProSitePatterns Thioredoxin family active site. 879 897 IPR017937 -
Pumo4g03879 1005 NCBIfam protein disulfide-isomerase 519 1005 IPR005792 GO:0003756
Pumo4g03879 1005 MobiDBLite consensus disorder prediction 972 1005 - -
Pumo4g03879 1005 SUPERFAMILY Thioredoxin-like 726 856 IPR036249 -
Pumo4g03879 1005 FunFam protein disulfide-isomerase A2 623 727 - -
Pumo4g03879 1005 Pfam Protein tyrosine and serine/threonine kinase 150 402 IPR001245 GO:0004672|GO:0006468
Pumo4g03879 1005 Gene3D Transferase(Phosphotransferase) domain 1 215 421 - -
Pumo4g03879 1005 ProSiteProfiles Thioredoxin domain profile. 837 966 IPR013766 -
Pumo4g03879 1005 CDD PDI_a_PDI_a'_C 859 961 - -
Pumo4g03879 1005 SUPERFAMILY Thioredoxin-like 514 624 IPR036249 -
Pumo4g03879 1005 CDD PDI_a_family 522 619 - -
Pumo4g03879 1005 Gene3D Phosphorylase Kinase; domain 1 148 214 - -
Pumo4g03879 1005 Pfam Thioredoxin 521 621 IPR013766 -
Pumo4g03879 1005 Pfam Thioredoxin 859 944 IPR013766 -
Pumo4g03879 1005 ProSitePatterns Thioredoxin family active site. 540 558 IPR017937 -
Pumo4g03879 1005 ProSiteProfiles Thioredoxin domain profile. 502 624 IPR013766 -
Pumo4g03879 1005 PRINTS Thioredoxin family signature 547 556 - -
Pumo4g03879 1005 PRINTS Thioredoxin family signature 588 599 - -
Pumo4g03879 1005 PRINTS Thioredoxin family signature 539 547 - -
Pumo4g03879 1005 SUPERFAMILY Thioredoxin-like 854 966 IPR036249 -
Pumo4g03879 1005 CDD PDI_b'_family 748 838 - -
Pumo4g03879 1005 Gene3D Glutaredoxin 724 853 - -
Pumo4g03879 1005 FunFam Protein disulfide-isomerase 854 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03879 Pumo-Chr4 79126727 79134402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03879 150 405 Receptor kinase-like Gene Family AT1G79620 38.828 4.36e-45 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Pumo4g03879 PK_Tyr_Ser-Thr 1.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03879 K09580 - gmx:100804924 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03879 4 79126727 79134402 Pumo4g03879 4 79126727 79134402 ECH
Pumo4g03879 4 79126727 79134402 Pumo11g01467 11 45142510 45146715 PCT