Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03877 ATGGCGAAAGATGTTGAGCAGGTTACAGAGCAAGGTGAATACTCCGCGAAGGACTACCACGACCCACCTCCGGCGCCGTTGATCGACCCTGATGAGCTCACTAAGTGGTCTTTGTACAGAGCCGCCATAGCTGAGTTCATAGCTACCCTACTCTTCCTTTACATCACCGTGTTGACGATTATTGGCTACAAGAGACAGAGTGACACGAAAATTGCCGGTAACACCGAATGTGACGGCGTCGGCATTCTGGGCATAGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGCGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAAAAATCGTACTACAACAGGTATGGAGGTGGGGTTAACCTTGTGAGCGATGGCTACAACAAAGGTACCGCCTTGGGTGCTGAGATCATTGGTACCTTCGTTCTTGTCTATACCGTTTTCTCCGCCACTGATCCTAAGAGGAGCGCTAGGGACTCTCATGTTCCTGTACTAGCACCACTTCCCATTGGATTTGCTGTCTTCATGGTTCACTTGGCTACGATCCCAGTCACTGGCACCGGCATTAACCCGGCAAGGAGTTTCGGTCCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGTTGGAGCTGCGGTGGCTGCATTCTACCATCAATACATTCTTAGAGCTGCAGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAA 864 0.5174 MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIAGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSYYNRYGGGVNLVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAFYHQYILRAAAIKALGSFRSNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03877 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Pumo4g03877 287 MobiDBLite consensus disorder prediction 1 17 - -
Pumo4g03877 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Pumo4g03877 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g03877 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 276 IPR034294 -
Pumo4g03877 287 FunFam Probable aquaporin PIP1-2 25 287 - -
Pumo4g03877 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g03877 287 MobiDBLite consensus disorder prediction 1 25 - -
Pumo4g03877 287 NCBIfam MIP family channel protein 44 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g03877 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g03877 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g03877 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g03877 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g03877 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g03877 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g03877 287 SUPERFAMILY Aquaporin-like 32 273 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03877 Pumo-Chr4 79115547 79116702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03877 1 287 Major Intrinsic Protein MIP AT2G37170 79.094 2.00e-169 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03877 K09872 - gmx:732604 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03877 4 79115547 79116702 Pumo4g03877 4 79115547 79116702 ECH
Pumo5g03048 5 78518517 78521284 Pumo4g03877 4 79115547 79116702 ECH
Pumo3g03218 3 59460992 59462889 Pumo4g03877 4 79115547 79116702 ECH
Pumo4g03877 4 79115547 79116702 Pumo11g01464 11 45129306 45131558 PCT