Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03870 ATGAAGGAAACGGAGAAGAGTTTCGATCCGCAGCTGTGGCACGCGTGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTGTTTTACTTTCCGCAGGGACACGCGGAACACGCGCAGTCCAACGTTGATTTCGGAGCGACGAGGATTCCGATTCCTCCACTCATTCTGTGCCGCGTGGCAGCTGTGAAATTCCTGGCGGACCCCGAAACGGACGAGGTCTTCGCCAGGCTGAGGCTGGTTCCTCTCAGAAACTCGGAGCTTGACTACGAAGATAACGACGCCGTTGACGGTAACGGCGCGGAGGCTTCGGAGAAGCCGGCGTCGTTCGCGAAGACGTTAACTCAGTCCGACGCGAATAATGGCGGGGGGTTCTCGGTGCCGCGGTACTGCGCGGAGACGATTTTCCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTGCAGACGGTGATCGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCACGTCGGCACTTGCTGACTACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTCGCAGGGGATTCTATTGTGTTTCTTCGGGCCGAGAATGGGGATCTTTGCGTGGGGATTCGTAGGGCCAAGAGAGGGGGCGTTGGTGGGCCGGAGGGGCCGTGCGGGTGGAGCTCTAGTGGTGGTGGGCTTGGGCTTGGGCCTTATGGGGCGGCCTTTTCGGCTTTTTTGAGGGAGGAGAGTAAGGTGGTGAGGAATGGGTGTGGGAGGCCGAAGGTGAGTGGTGAGTCTGTGAGAGAGGCTGTTACTTTGGCGGCGAGTAATCAACCGTTTGAGGTTGTTTACTATCCTCGGGCTAATACTCCAGAGTTTTGTATTAGGACTTCGGCTGTGAGAGGGGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTTAAGATGCCCTTTGAGACTGAGGATTCTTCAAGGATAAGCTGGTTCATGGGGACTATTGCTTCTGTTCAGGTTGTTGATCCTATCCGTTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTTACATGGGATGAGCCAGATTTGCTACATAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAGTTGGTATCGAACGTGCCAATCATCCATCTGGCACCCTTCTCTCCACCAAGGAAGAAGCTTAGGTTTCCACAACACCCAGAGTTTCCCCTTGACGTTCAATTTCCGATACCAACGTTTTCAGGCAACCCCTTTGGGTCTAGCACTAGCAGCCCCTTGTGTTGTCTTACTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTCCACCTTAACAATAAGCTGCAGTTGGGGTTGCTTCCGACTAACGTCCACCAGCTTAATTTGCACACTGGGATTTCTAATGGCAACATCACCAACCATGGTAAGAGTAAAGAAAGTCTATCATGCTTGCTGACCATGGGAAATTCAAACAAGAGTTTGGAGAAATCTGATCATGTGAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATACTCACCGAGAAACAAATTTCTAGATCTTCTAGTGATGTGTTGTCTCAAAATTGCACCGCAACGGATGATGAGAATAAGGAGAAGAAGGAAAAGGGATTTCTTAGTGACTCCCAATCTTCAGTTTCACCAGGAAAGTCTTCTTCTACCGCCGAGTTCTCTTGGCAACTCGGTTCGGATACCAGTCATTGCAAGGTTTTCATGGAGTCAGAAGATGTGGGACGGACCCTTGACTTGTCCTGTCTTGGTTCTTATGAAGAGTTGTACATGAGACTGTCTAACATGTTTGGAATAGAAAGGTCTGAGATGTTGAGTCATGTTCTCTACCGCGACGCATCCGGTGCTCTTAAGCAAACTGGAGAAGAACCATTCAGTGAGTTCATGAAGACAGCAAAAAGATTGACTATTCTGACGGATTCAAGCAACAAAGATAGTAGAAGGGTTTGGATCACAGGAACTCGGAATGCTGAACACGGATTGGATGCATCGAATAAGACAGGTCCTCTGAGTATATTTGCATAA 2088 0.5096 MKETEKSFDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNVDFGATRIPIPPLILCRVAAVKFLADPETDEVFARLRLVPLRNSELDYEDNDAVDGNGAEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEGPCGWSSSGGGLGLGPYGAAFSAFLREESKVVRNGCGRPKVSGESVREAVTLAASNQPFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNVPIIHLAPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNPFGSSTSSPLCCLTDNAPAGIQGARHAQIGISLSDLHLNNKLQLGLLPTNVHQLNLHTGISNGNITNHGKSKESLSCLLTMGNSNKSLEKSDHVKRHQFLLFGQPILTEKQISRSSSDVLSQNCTATDDENKEKKEKGFLSDSQSSVSPGKSSSTAEFSWQLGSDTSHCKVFMESEDVGRTLDLSCLGSYEELYMRLSNMFGIERSEMLSHVLYRDASGALKQTGEEPFSEFMKTAKRLTILTDSSNKDSRRVWITGTRNAEHGLDASNKTGPLSIFA 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03870 695 FunFam Auxin response factor 110 214 - -
Pumo4g03870 695 SUPERFAMILY DNA-binding pseudobarrel domain 106 213 IPR015300 -
Pumo4g03870 695 ProSiteProfiles PB1 domain profile. 583 663 IPR000270 GO:0005515
Pumo4g03870 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 662 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo4g03870 695 FunFam Auxin response factor 309 382 - -
Pumo4g03870 695 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Pumo4g03870 695 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Pumo4g03870 695 CDD B3_DNA 111 212 IPR003340 GO:0003677
Pumo4g03870 695 Gene3D - 309 381 - -
Pumo4g03870 695 SMART B3_2 112 214 IPR003340 GO:0003677
Pumo4g03870 695 Gene3D - 580 667 - -
Pumo4g03870 695 Gene3D - 110 214 IPR015300 -
Pumo4g03870 695 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo4g03870 695 MobiDBLite consensus disorder prediction 535 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03870 Pumo-Chr4 79031460 79034996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03870 4 661 B3 DNA Binding Superfamily AT4G30080 61.504 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo4g03870 B3 4.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03870 - - gmx:100778135 1268.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03870 4 79031460 79034996 Pumo4g03870 4 79031460 79034996 ECH
Pumo4g03870 4 79031460 79034996 Pumo11g01452 11 44996906 45000761 PCT