Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03869 ATGTGCTTCCATTTCCTCACTCCACCAAAACCATGTCTGAGTGTTTTGGAACAGGATATTGCTAATATGAAGGACTCTTGGTTTTTCGACAATAATTTTAATGGTCTGTCAGATGAGATTTTTGATGATGTCATCAACTTTTTTGATTTCCCGCTGGAAGACGTGGATGCTAATGGTGTGGAAGAAGACTGGGATGCTCAATTAAAATGCCTTGAAGACCCACGTTTTGATGTTTATTCAGCATCATCAGCTGGGCTGTGTGGCAAACCTCAAAATGAAAAGCCCCAACTTGGAATGGAGTTCTCTGCTTCTAGTAACGGGATTTCCCCAATAAAACAGCCAGCAAAGGCTGCTGGACCAACATATGGAAAGACCATTCCCCACCAGAATGTCACTTCCAATGGAAAAGATTTGCATCAATTCCAAACCTACACCTACAGCCCAGTTTCGGTTTTTGAAAGCAGCAGTTCTTCCTCAGTTGAGAATTCCAACTTTGATCGACCTGTCATTCCAGTAAAGCGTGCTCGAAGTAAACGTCAGCGCCCTTCAAGCTTCAGTCCTCTATTTTCTGTTCCTTTCATCCTTAATTCACCAGCTTTGCGAAAACATCAAAGGACAGCTGCCTCTGAATCAGATTTCGGAACAAATGTTGCTGGGAATCTATCAAACAAAGTTAAAAAGCAGAGGAAAAAGGATGTGTCCCTTGTCTCAGATGATGTTGAGATGATGAGATCCTCATCACTGGAGTCAGTTCCCACCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTCTGCAATGCTTGTGGTGTTCGATACAGGTCTGGCCGCCTCTTTCCCGAATATCGACCGGCAGCTAGCCCGACTTTTGTAGCATCAGTGCACTCAAACTGTCACAAGAAGGTTGTGGAGATGAGAAGCAGAGGCATCCAGGAGGCTGTTAGGGGTTCTATGTTGGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 1029 0.4431 MCFHFLTPPKPCLSVLEQDIANMKDSWFFDNNFNGLSDEIFDDVINFFDFPLEDVDANGVEEDWDAQLKCLEDPRFDVYSASSAGLCGKPQNEKPQLGMEFSASSNGISPIKQPAKAAGPTYGKTIPHQNVTSNGKDLHQFQTYTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRPSSFSPLFSVPFILNSPALRKHQRTAASESDFGTNVAGNLSNKVKKQRKKDVSLVSDDVEMMRSSSLESVPTRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASVHSNCHKKVVEMRSRGIQEAVRGSMLASSNLHGNSVG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03869 342 CDD ZnF_GATA 255 302 IPR000679 GO:0006355|GO:0043565
Pumo4g03869 342 PANTHER GATA TRANSCRIPTION FACTOR 59 325 - -
Pumo4g03869 342 FunFam GATA transcription factor 246 332 - -
Pumo4g03869 342 ProSiteProfiles GATA-type zinc finger domain profile. 250 286 IPR000679 GO:0006355|GO:0043565
Pumo4g03869 342 Gene3D - 251 300 IPR013088 GO:0006355|GO:0008270
Pumo4g03869 342 SMART GATA_3 250 300 IPR000679 GO:0006355|GO:0043565
Pumo4g03869 342 ProSitePatterns GATA-type zinc finger domain. 256 281 IPR000679 GO:0006355|GO:0043565
Pumo4g03869 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 253 312 - -
Pumo4g03869 342 Pfam GATA zinc finger 256 289 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03869 Pumo-Chr4 79017708 79022453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03869 36 320 C2C2-Gata Transcription Factor Family AT1G08000 38.676 7.77e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo4g03869 GATA 3.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03869 - - gmx:100813303 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03869 4 79017708 79022453 Pumo4g03869 4 79017708 79022453 ECH