Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03863 ATGGCTTTTGGTAATTCAAGATCTGCAAGGTTTGAAGATGATCCGGAGCTAGCAAAATTTCCTGCGACTAACGGTGACAATGGTGTTAAGATTAAATTCCACATTGATGGAACACAAATACCTGAGCCTAGTTCCAACATGGCTCAGAAAAAGGTGACAGGGAAGTTCTTGAAAGCTAGAATGTTGTCAAGAGTGTTCTCAGAAGACTACGACAGAGTAAAACGAAGAGTGTTAGATCCTAGGGGACAAACCATACACCGATGGAACAAGATTTTCTTGGTAGCATGTTTAGTGTCTTTGTTTGTGGACCCTTTGTTCTTTTATCTGCCAGCGGTTCGAGATGAAGTGTGCATTGATATTGGAATAACTCTTGAAGTTATCCTCACATTGGTAAGATCAGTGGGGGATGTCTTTTACGTGATTCAGATTTTGATGAAGTTTCGTACGGCTTTTGTTGCTCCTTCTTCAAGAGTTTTTGGGAGAGGAGAACTTGTTGTAGGATATCCTAAGATTGCATTTAGGTACCTCCGCAAAGGTTTCTGGTTAGACTTTGTTGCTGCCCTGCCCCTTCCTCAGGTGTTAATTTGGATTGTTATCCCAACTCTTAGGGGTTCAACCATGGCCAACACAAAAAATGTCCTTCGCTTTTTCATCATTTTCCAATATTTTCCAAGGCTTCTTTTGATTTTTCCACTCTCATCACAAATTGTAAAAGCTACAGGGGTTGTGACGGAAACAGCATGGGCAGGGGCAGCTTACAACCTTATGCTTTACATGTTGGCTAGCCATATTTTAGGGGCTTGCTGGTACCTTCTGTCAATCGAACGTCAAGAAGCATGCTGGAGAAGTGTATGCGATTTGGAGAAGTCATTTTGTCAATATGGATTCTTTGACTGCCACAGGGTTAAAGATGCCCTCAGGGTCTCCTGGTTTATGGCAAGTAATATCACAAATTTATGCTCACCAAATGCAAACCATGACTTCTATCAGTTTGGTATATACGCTGATGCCGTCACTTCCAGAGTTACATCCTCAGCTTTCTTTAATAAGTACTTCTTTTGCCTGTGGTGGGGCCTAAGGAATTTGAGTTCTTTGGGACAAGGCCTTCTTACTAGCACATATGTTGGAGAAATAATGGTCGCCATTGTTATTGCAACCCTTGGATTGGTTCTTTTTGCGTTGCTAATTGGTAATATGCAGACATATCTCCAATCAACCACAGTTCGCTTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAACTAAGAGAATCTGTGCGTAAATATGACCAATACAAATGGCTGGCTACACGAGGAGTAGATGAAGAAACTCTTCTCAAAGGACTTCCCGTGGATCTTCGTAGAGACATCAAGCGCCACCTCTGTCTTGATCTAGTTCGAGGGGTGCCATTATTTGATCAAATGGACGAGAGAATGCTGGACGCAATATGTGAGAGGCTAAAGCCTGCATTGTGCACAGAGGGCACCTTTCTTGTCCGCGAGGGTGATCCTGTGAACGAGATGCTCTTCATAATCCGAGGCCATCTTGATTCTTACACCACCAACGGGGGCCGGGCCGGGTTCTTCAACTCATGCCTTATTGGGCCAGGCGACTTCTGCGGCGAGGAGCTTCTAACATGGGCCTTGGACCCACGGCCCAGTGTGATACTCCCCTCATCCACTCGAACAGTGAAAGCCATCTCAGAAGTAGAGGCCTTTGCACTCATAGCCGAAGACCTCAAGTTTGTCGCATCACAATTTAGAAGACTACACAGCAAACAACTCAGACATAAGTTCAGGTTTTACTCGCACCAGTGGAGAACTTGGGCCGCGTGTTTCATTCAAGCCGCGTGGAGAAGGCACAAGAAGAGAAAGGAAGTTGCTGAACTAAGGGCAAGGGCAATTAATATTGCTGAGCCTCAAACACCAACATATGCAAAAAGGGTTGCAAGGAGTACTAGGAAAGGTGTCAATATTAATATGCATTCTCGGACAGATTCTGGAGTTGTCAGCTCTTTGCAGAAGCCAGCAGAACCTGACTTCTCTGTTGATGAATGA 2091 0.4438 MAFGNSRSARFEDDPELAKFPATNGDNGVKIKFHIDGTQIPEPSSNMAQKKVTGKFLKARMLSRVFSEDYDRVKRRVLDPRGQTIHRWNKIFLVACLVSLFVDPLFFYLPAVRDEVCIDIGITLEVILTLVRSVGDVFYVIQILMKFRTAFVAPSSRVFGRGELVVGYPKIAFRYLRKGFWLDFVAALPLPQVLIWIVIPTLRGSTMANTKNVLRFFIIFQYFPRLLLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCDLEKSFCQYGFFDCHRVKDALRVSWFMASNITNLCSPNANHDFYQFGIYADAVTSRVTSSAFFNKYFFCLWWGLRNLSSLGQGLLTSTYVGEIMVAIVIATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWLATRGVDEETLLKGLPVDLRRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCLIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEVAELRARAINIAEPQTPTYAKRVARSTRKGVNINMHSRTDSGVVSSLQKPAEPDFSVDE 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03863 696 ProSiteProfiles IQ motif profile. 618 647 IPR000048 GO:0005515
Pumo4g03863 696 Gene3D - 89 406 - -
Pumo4g03863 696 FunFam Cyclic nucleotide-gated ion channel 1 480 598 - -
Pumo4g03863 696 FunFam Cyclic nucleotide-gated ion channel 1 409 473 - -
Pumo4g03863 696 SUPERFAMILY cAMP-binding domain-like 412 608 IPR018490 -
Pumo4g03863 696 Gene3D Helix hairpin bin 409 473 - -
Pumo4g03863 696 SMART cnmp_10 482 613 IPR000595 -
Pumo4g03863 696 MobiDBLite consensus disorder prediction 676 696 - -
Pumo4g03863 696 ProSiteProfiles cAMP/cGMP binding motif profile. 482 579 IPR000595 -
Pumo4g03863 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 63 692 - -
Pumo4g03863 696 CDD CAP_ED 482 613 IPR000595 -
Pumo4g03863 696 Pfam Ion transport protein 88 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo4g03863 696 Gene3D Jelly Rolls 480 600 IPR014710 -
Pumo4g03863 696 SUPERFAMILY Voltage-gated potassium channels 79 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03863 Pumo-Chr4 78945462 78949695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03863 54 695 Ion Channels AT2G28260 77.174 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03863 K05391 - gmx:100786868 1316.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03863 4 78945462 78949695 Pumo4g03863 4 78945462 78949695 ECH
Pumo4g03863 4 78945462 78949695 Pumo11g01447 11 44922039 44926917 PCT