Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03860 ATGGGAAGCAAATGGAGAAAAGTGAAGCTTGCTATTGGGATCAACATGTGCGTTCAAGTCCCTAAGACTATCGAACATTCCTCCTCCTCCGCCACCGCCTTCTCCGACCGCGTTTCGCCCTCCGCCGACGCCTCCGGCCACCGCTCCGTCACTTCCACAACCTCCTCCTCCGGCCTCCGACTCTCCAGATCCAAATCCAAATGCTCCAAGGGGACATGTGCAATTTGCCTGAACTCAATGAAACCAGGGCAGGGACATGCCATTTTTACTGCAGAATGTTCTCACTCTTTCCATTTCCAATGCATTACATCTAATGTAAAACATGGGAACAGGATTTGCCCTGTCTGCAGAGCAAAATGGAAAGAGGTTCCTTTTCAGAGTCGTTCTTCTAAGGTCTCCCATGACATCAACCGAGTAAATTCACCGCAAAATGATTCCTGGACAACTCTCCTAGGGAGGGTTCCTTCCCAACATGTTGGAACAGGTCCACAACATGCATCTCCTAATAATGTTACTGAACCAGCTATCTTTGATGATGATGATGAAGTCTTGGATCAACAAACTTCAGCTACCGAAGCTATGAATGAGGCTGATCACAATGTAGTAAACACAATGGAGATCAAAACATATCCTGAAGTTTCAGCTGTTGCAAAGTCAGCCTCTCATGATAACTTTGCTGTATTAATTCATCTCAAAGCTCCCCCTCGTTCAGGGATGCACAGAAACAATACCGAATCATCATCATCACCTTCATCAGCTCAAAATTCTTGTGCTCCAGTTGATCTTGTTACGGTTCTTGATGTGAGTGGCAGCATGTCAGGCACAAAGATTGCACTACTGAAACGAGCTATGGGTTTTGTCATACAGAATCTGAGTTCATCAGACCGGCTTTCTGTCATTACTTTCTCTTCCACAGCCCGCCGCATCTTTCCTCTTCGGAGGATGACTGATGCTGGAAAACAGGAGGCATTGCAGGCTGTTAATTCTTTGGTTCCAAATGGTGTTACAAACATTGTTGAAGGGTTGAGGAAAGGTGCCAAAGTGTTTGTTGACCGCAAGTGGAAGAAACCCAGTTGGCAGTATCATATTACTATCTGA 1098 0.459 MGSKWRKVKLAIGINMCVQVPKTIEHSSSSATAFSDRVSPSADASGHRSVTSTTSSSGLRLSRSKSKCSKGTCAICLNSMKPGQGHAIFTAECSHSFHFQCITSNVKHGNRICPVCRAKWKEVPFQSRSSKVSHDINRVNSPQNDSWTTLLGRVPSQHVGTGPQHASPNNVTEPAIFDDDDEVLDQQTSATEAMNEADHNVVNTMEIKTYPEVSAVAKSASHDNFAVLIHLKAPPRSGMHRNNTESSSSPSSAQNSCAPVDLVTVLDVSGSMSGTKIALLKRAMGFVIQNLSSSDRLSVITFSSTARRIFPLRRMTDAGKQEALQAVNSLVPNGVTNIVEGLRKGAKVFVDRKWKKPSWQYHITI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03860 365 SUPERFAMILY RING/U-box 67 123 - -
Pumo4g03860 365 MobiDBLite consensus disorder prediction 239 256 - -
Pumo4g03860 365 ProSiteProfiles Zinc finger RING-type profile. 73 117 IPR001841 -
Pumo4g03860 365 Pfam RING-like zinc finger 73 102 IPR001841 -
Pumo4g03860 365 MobiDBLite consensus disorder prediction 35 64 - -
Pumo4g03860 365 ProSiteProfiles VWFA domain profile. 261 365 IPR002035 -
Pumo4g03860 365 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 71 357 - -
Pumo4g03860 365 CDD RING-H2_WAVH2 67 122 - -
Pumo4g03860 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 210 IPR013083 -
Pumo4g03860 365 SMART ring_2 73 116 IPR001841 -
Pumo4g03860 365 Pfam von Willebrand factor type A domain 261 355 IPR002035 -
Pumo4g03860 365 Gene3D von Willebrand factor, type A domain 261 363 IPR036465 -
Pumo4g03860 365 MobiDBLite consensus disorder prediction 235 256 - -
Pumo4g03860 365 SUPERFAMILY vWA-like 259 356 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03860 Pumo-Chr4 78928719 78931874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03860 - - gmx:100811322 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03860 4 78928719 78931874 Pumo11g01444 11 44857505 44860980 PCT