Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03853 ATGAGCAGTTTAAGGCCTGAATCTCATGTAGCACAGCAAATTCGGCGTGAAAAATTGAGAATCCAGAACAGTTCTCAGCCTTTACACGAATTCCCTAACAATCATCTTGAACAGTTATCTTTACACCCGGGGTTTAATAACTTGGACCTTCTTCAAGTTAGGAATGTTAGAAATGCCAACATGCTTGATGAACTAGCTGTTTATTCATCAGAAATGCCAAACTTTTCTACTTCTTCGAATCCTTTGTCTGCTCCAAGGAACGCGTTGGAGTATCACCAAGAGCAAGGTGCAGCAGCTGAACCGAGTAATAGGCTGATGATGAATCAGTATGGTTCACTTCCCCATTCCATGTCTGCAATTCATTCTTCCCAAAAAGAACAGTGTGAGCTTCGTAATTTGGGAAATTGGAGGAACAGTGCCCCCCATCAAGGATCTGATTGGTTTGTAAATTATGCAAACAATGCCAATTCTTTTTTGTCTGCTGAGCTCAACAACAATGAACTAGGTATACTGCATAATCCTCCTCCTTCATCTCCACTGTATCAGAATGCTTTGCAAGATATTGTGAAGTCAGCTTCTATCAGTGCCCACACTAGGCAAGACATGGCCTCACTGATGCAACAAAATGACCACAGTATTTGGGTGGGGAATGCTAGTGAAGTTGAGCTTCAACAACCAAGTTATGAAAATCAACCAAATCAGTTGCGTTTTGGGTGGACAAATCGAACAATTGCTAGTGATTCACTTCCTCAGAGCTTGTCCTTATCACTTTCATCAAATGCACAACCCAAGCCTTCTGTTTCTCAGCTTGAACAAGGGTCTGCATCAGACGGTCCTCAGTGTTTGATGTATATGAAATATATTGTGAAGCCTTCTATTGTTTCTAGAGATTGTGGGAAATCACCTCAAGACACAGTGGCAATGCCTTCAAAGAGTACTATTAGTTATCGAAGTGTGGGTCCCCTTGGACCTTTCACTGGGTATGCTACTATTCTTAAGAGCTCAAGGTTCTTAAAGTCTGCCCAACAATTGTTAGATGAGATTTGCTCTCTATCTGGTGCAAAATTTGCGAAATCATATGATGTTTCAGAGAGGGTTTCTCCTGAAGTTAGTGCTTCTACTTCTGCTGATACTGTTACTGTCAATGAAACTGGGATTGCTGCAAAAGGTAGCAACTCAGGTTCTTCATCATCTATGTTGTATAATGTTTCAAAGGAAAATAGGGCTGATCCGGGAGTTGGAAGTAGCTTTGGTCTTTCCTCGCGGCCAGATTATCAACAAAAGAAAGCAAAGCTCCTGTACATGCAAGAGGAGGTTACCAGGCAATGCAAGCAGTACCATCTACAAATGCAATTGGTTGTTTCATCGTTCCAGTCAGTAGCGGGTCTTAGTTCTGCTACTCCTTACATCCCCATGGCTCTCAGGTCAGTATCAAAACACTTCAGGTGCCTAAAAAATTCTATCTCAGATCAGCTCAAACTTATAAGTGAAGCCTTGGGAGAGGATTTGTCAATACCCTCCACCAGTACTAGCGGTAAAGCTGACACCACTATGGCGAGGATAAGATGCAGCAGCATGGACCAAAGCTTTCTAAGGAACAAATGTGGCAGGGGTACCACGGAACTTCTTGAACCCCAACAGCATGTGTGGAGGCCCCAAAGAGGGCTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATGCTGGCTAGTCAAACAGGTCTTTCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGAGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAAGCAACTGGCTCCAAGGACAACTGTGGTAAAAATGAGGGAACTTCTTCTGGCACTGGAGGTGACACCAGCCAGCCTAGAGTGGATAAGCCTTTGAGCAATATTAGTATGAATTCAATACCCGAAACCCAATTTCAGGGTATGGATATGGGATCATCCATAGCTGCCAATGATGAGGAAAGTGGGTTAAACACAGAACAATGGAGTCAAGAGAAGAGGTCTAAATTGGAATGCCAAATGACTTCAAACGTTGATGGAACACTTATGGGTTTTGTGCCATACCGACGTGGTGGCATTGAGGTTGGTGGACTAGGGTCTGTGTCACTAACATTGGGTCTTAGGCATGGCGTTGAAGGTGTACAACAACAACAATTGGAAGAGGAGCAACTTAGACATCAACTTGGAGGGCACATGATCCATGACTTTGTGGGCTGA 2295 0.434 MSSLRPESHVAQQIRREKLRIQNSSQPLHEFPNNHLEQLSLHPGFNNLDLLQVRNVRNANMLDELAVYSSEMPNFSTSSNPLSAPRNALEYHQEQGAAAEPSNRLMMNQYGSLPHSMSAIHSSQKEQCELRNLGNWRNSAPHQGSDWFVNYANNANSFLSAELNNNELGILHNPPPSSPLYQNALQDIVKSASISAHTRQDMASLMQQNDHSIWVGNASEVELQQPSYENQPNQLRFGWTNRTIASDSLPQSLSLSLSSNAQPKPSVSQLEQGSASDGPQCLMYMKYIVKPSIVSRDCGKSPQDTVAMPSKSTISYRSVGPLGPFTGYATILKSSRFLKSAQQLLDEICSLSGAKFAKSYDVSERVSPEVSASTSADTVTVNETGIAAKGSNSGSSSSMLYNVSKENRADPGVGSSFGLSSRPDYQQKKAKLLYMQEEVTRQCKQYHLQMQLVVSSFQSVAGLSSATPYIPMALRSVSKHFRCLKNSISDQLKLISEALGEDLSIPSTSTSGKADTTMARIRCSSMDQSFLRNKCGRGTTELLEPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGSKDNCGKNEGTSSGTGGDTSQPRVDKPLSNISMNSIPETQFQGMDMGSSIAANDEESGLNTEQWSQEKRSKLECQMTSNVDGTLMGFVPYRRGGIEVGGLGSVSLTLGLRHGVEGVQQQQLEEEQLRHQLGGHMIHDFVG 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03853 764 MobiDBLite consensus disorder prediction 625 654 - -
Pumo4g03853 764 SMART HOX_1 550 614 IPR001356 GO:0003677
Pumo4g03853 764 CDD homeodomain 550 611 IPR001356 GO:0003677
Pumo4g03853 764 MobiDBLite consensus disorder prediction 623 654 - -
Pumo4g03853 764 Gene3D - 553 615 - -
Pumo4g03853 764 ProSiteProfiles 'Homeobox' domain profile. 547 610 IPR001356 GO:0003677
Pumo4g03853 764 Pfam Associated with HOX 331 489 IPR006563 -
Pumo4g03853 764 MobiDBLite consensus disorder prediction 255 275 - -
Pumo4g03853 764 FunFam BEL1-like homeodomain protein 9 553 615 - -
Pumo4g03853 764 Pfam Homeobox KN domain 567 606 IPR008422 GO:0003677|GO:0006355
Pumo4g03853 764 SUPERFAMILY Homeodomain-like 552 617 IPR009057 -
Pumo4g03853 764 SMART prehox3 326 490 IPR006563 -
Pumo4g03853 764 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 202 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03853 Pumo-Chr4 78835509 78842461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03853 308 735 Homeobox Transcription Factor Family AT4G34610 35.683 4.02e-63 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo4g03853 POX 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03853 - - gmx:100790583 1231.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03853 4 78835509 78842461 Pumo4g03853 4 78835509 78842461 ECH
Pumo4g03853 4 78835509 78842461 Pumo11g01430 11 44662474 44668120 PCT