Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03841 ATGTTTAACTGGGCTGGAAGAAAGAAACTGATAGAATCTCTGTCAGTTACTTTCCATGGACATGATTTGATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGACGTTATGGCTTACTTGGATTAAATGGTTGTGGAAAATCTACCCTGCTTACGGCAATAGGTTGTCGAGAGCTACCTATTCCAGACCACATGGATATTTATCACCTTACCAGAGAAATTGAAGCCTCAGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGCTTTGGCAGCTCAGGATGATGGAGGTGGGGAAACTCTTGAACGTATTTATGAACGATTGGAAGCCATTGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAAGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCACGTGCTCTATTTATGAACCCTACCATTCTCTTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCATGTGTGTGGCTGGAAGAGAATCTGAAGAAGTTTGACCGTATTCTGGTTGTGGTTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAGAAGCTGAAGCTCTACACTGGTAATTATGATCAATATGTTCAGACACGTTCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAAATTGCCTCGATGAAGGAATACATAGCTCGATTTGGTCATGGATCAGCAAAACTAGCTCGCCAAGCCCAGAGTAAAGAGAAAACTCTTGCCAAAATGGAGCGGGGTGGACTTGCAGAGAAGGTGGTAAGAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTTCCCCCACCTGTCCTCCAGTTTGTTGAGGTGACATTTGGGTACACACCTGATAATCTGATCTACAAGAACCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAATGGAGCTGGGAAGAGTACGTTACTGAAGCTAATGACTGGTGATTTGGAACCTCTAGATGGCATGGTTCGACGCCACAATCACCTTCGGATTGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACTTGGAATTGTCTGCCCTCCAGTATATGATAAAAGAATACCCTGGAAACGAGGAGGAGAGGATGAGAGCAGCCATTGGGAAATTTGGACTGTCAGGTAAAGCGCAGGTGATGCCGATGAAGAATTTATCTGATGGGCAGAGGAGCCGCGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACATGCTACTTTTGGATGAGCCAACAAACCATTTGGATATTGAAACAATTGACTCATTGGCTGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGCGCTGATCAAGCTGTGACCAGATGGGAAGGTGATATCATGGGTTTCAAGGAGCACCTAAGGTCAAAGGCGGGTTTATCTGACTGA 1608 0.4415 MFNWAGRKKLIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLRLEKEAEALAAQDDGGGETLERIYERLEAIDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLEPLDGMVRRHNHLRIAQFHQHLAEKLDLELSALQYMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMGFKEHLRSKAGLSD 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03841 535 FunFam Abc transporter f family member 1 9 273 - -
Pumo4g03841 535 FunFam ATP-binding cassette sub-family F member 3 280 534 - -
Pumo4g03841 535 Pfam ABC transporter 27 181 IPR003439 GO:0005524
Pumo4g03841 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 514 IPR027417 -
Pumo4g03841 535 SMART AAA_5 33 235 IPR003593 GO:0016887
Pumo4g03841 535 SMART AAA_5 345 533 IPR003593 GO:0016887
Pumo4g03841 535 Coils Coil 227 247 - -
Pumo4g03841 535 CDD ABCF_EF-3 320 511 - -
Pumo4g03841 535 Gene3D - 294 532 IPR027417 -
Pumo4g03841 535 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 9 249 IPR003439 GO:0005524
Pumo4g03841 535 ProSitePatterns ABC transporters family signature. 153 167 IPR017871 GO:0005524|GO:0016887
Pumo4g03841 535 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 320 535 IPR003439 GO:0005524
Pumo4g03841 535 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 10 530 - -
Pumo4g03841 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 256 IPR027417 -
Pumo4g03841 535 Gene3D - 11 273 IPR027417 -
Pumo4g03841 535 Pfam ABC transporter 220 296 IPR032781 -
Pumo4g03841 535 Pfam ABC transporter 336 467 IPR003439 GO:0005524
Pumo4g03841 535 CDD ABCF_EF-3 11 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03841 Pumo-Chr4 78673684 78676296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03841 29 207 Calmodulin-binding Proteins AT2G36910 27.869 4.71e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03841 K06185 - gmx:100785099 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03841 4 78673684 78676296 Pumo4g03841 4 78673684 78676296 ECH
Pumo4g03841 4 78673684 78676296 Pumo11g01417 11 44479479 44483615 PCT