Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03837 ATGCAGAGATCCGGTTATGGTTCCGACGGAATATACAGGTCCCTCAGACCTTCCATCTTTATACCAAAAGACCCAAACCTCTCACTTGTTTCTCATCTTTTCAACAGAGTCGCTCCCTTTCCATCCAAACCCGCTCTCATCGATGCCGACTCTTCCGAAACACTTTCATTTGCGGAACTAAAGGCGTTGACCGTTAAAGTCTCCCACGGCCTCCTCCGCCTCGGAGTCACCAAAAACGACGTCGTACTCTTCCTCGCCCCCAACGACATCCGCTACATCGTCTGCTTCCTCGCCGTCACCTCCCTCGGCGCCGCCGTCACCACCGTCAACCCCGCCTACACCGCCGCCGAAGTCGCCAAACAAGCCACCGACTCCAATCCCAAACTCGTCGTAACCGTCCCCGAACTTTGGAACAAACTCGAACACCTCAAGCTCCCCGCGATCTTCCTCCGCTCCCACGCGCCCTCCAGCGCGACTAGCTTCGACGCGCTGCTACAACTCGCCGGGTCGGCGACCGAGTTCCCGAAAATCACCATTAAACAGAGTGACACGGCGGCGCTGCTGTATTCTTCGGGGACGACGGGCGTGAGCAAGGGCGTGGTGCTCACGCACGGGAACTTCATCGCGGCGTCGTTGATGATCGGGTTGGACGATGATTTGGCGGGTGAATTGTACGGCGTGTTGCTCTGCGTTTTGCCGATGTTTCATGTGTTTGGTTTGACGGTGATTTCGTACGGGCAGCTTCAGAGGGGTAGCGCGATCGTGTCTCTGAAGAAGTTTGAGTTTGAACTGGTTTTGAAGACCATTGAGAAGTTTAGGGTGACGCATTTGTGGGTCGTGCCTCCCATTATCCTTGCTCTCGCGAAACACGGTTTGGTTGATAAGTATGATCTTTCCTCCTTGAAGCATATTGCTTCCGGTGCTGCTCCTCTTGGGAAAGACTTGATGGAGGAGTGTGCTAAACGTTTTCCTCACGCCATTGTTTCTCAGGGATATGGTATGACTGAAACTTGTGGGATTGTTTCTCTGGAGGATAAAAGGATGGGGATTCGGAATAGTGGCTCCGCGGGAATGCTTGTGTCGGGAGTGGAAGCTCAAATAGTTAGTGTGGATACGCTCAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGTCCTAACATGATGCAAGGTTATCACAACAATCCACAAGCCACAAGATTGACTATAGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGGCAACTTTTTGTTGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTTGATGCTGTTGTCATCCCATATCCCGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTTGTACGTTCACCCAATAGTTCCCTGACCGAGGTAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCTCCTTTCAAAAGATTACGAAGAGTGACATTCATCAATGCTGTTCCTAAGACAGCATCGGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1611 0.5034 MQRSGYGSDGIYRSLRPSIFIPKDPNLSLVSHLFNRVAPFPSKPALIDADSSETLSFAELKALTVKVSHGLLRLGVTKNDVVLFLAPNDIRYIVCFLAVTSLGAAVTTVNPAYTAAEVAKQATDSNPKLVVTVPELWNKLEHLKLPAIFLRSHAPSSATSFDALLQLAGSATEFPKITIKQSDTAALLYSSGTTGVSKGVVLTHGNFIAASLMIGLDDDLAGELYGVLLCVLPMFHVFGLTVISYGQLQRGSAIVSLKKFEFELVLKTIEKFRVTHLWVVPPIILALAKHGLVDKYDLSSLKHIASGAAPLGKDLMEECAKRFPHAIVSQGYGMTETCGIVSLEDKRMGIRNSGSAGMLVSGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTIDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEVDVQKFIANQVAPFKRLRRVTFINAVPKTASGKILRRELIEKVRSKI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03837 536 Pfam AMP-binding enzyme 35 438 IPR000873 -
Pumo4g03837 536 Gene3D - 434 535 IPR045851 -
Pumo4g03837 536 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Pumo4g03837 536 FunFam 4-coumarate--CoA ligase 2 434 535 - -
Pumo4g03837 536 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 433 - -
Pumo4g03837 536 Pfam AMP-binding enzyme C-terminal domain 447 522 IPR025110 -
Pumo4g03837 536 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 531 - -
Pumo4g03837 536 Gene3D - 9 433 IPR042099 -
Pumo4g03837 536 CDD 4CL 21 528 - -
Pumo4g03837 536 SUPERFAMILY Acetyl-CoA synthetase-like 21 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03837 Pumo-Chr4 78617513 78622672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03837 1 536 Monolignol Biosynthesis Gene Families AT4G05160 66.912 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03837 K01904 - gmx:100797843 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03837 4 78617513 78622672 Pumo4g03837 4 78617513 78622672 ECH
Pumo4g03837 4 78617513 78622672 Pumo11g01415 11 44427583 44433150 PCT