Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03836 ATGGGAAGAGCTCCTTGTTGTGATAAGGCAAATGTGAAGAGAGGACCATGGTCACCAGAAGAAGACTCAAAGCTGAAGGATTACATAGAGAAGCACGGCACTGGAGGAAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAAGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCCAACATTAAGCACGGGGAATTCTCCGATGAGGAAGACAGAATAATTTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCCCAGTTGCCAGGCAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAGAGGAAACTCATGGGGTTGCTTCCTGCATCTCATCATCAAAGAATAGCACCCTATCAACAACCCTCCCCTCAGACCCCATCATCATTTCCTTCTCACTCACTACCCTCCTCAATCTACAGAGACTACTGCAACAACTCTCATCATTATTACTTCCCAGCACCAACCTCATCTCTCGCATGCCTTGAACCAATTTCTACTCCTCCAAGTAATTACACAAACACAACAACAACCACCTCCACTTCTACCTCTCTCCCTTTTTACCAAAACCAAGAGCCCTTGTCTAGTGTTAGTCCCATGCAGTATTACACCATGACAGACAGTTCCATGCTCGTGTTTGGAAGTGAAACAAGTTGCAGTTCCTCTGATGGAAGCTGCAATCAGGTTAGCCTTGGCAGAGAGATCAAACAAGAAGACATGGGGTTTCAGAATTTCATGTTTGGAGATCAGCACATGAACAAATTCATGATTAGTCAAAGCAACATTAATCATGATGGAGGTGAAGAACATGTGAACCAATGGACACAGAAGCCAAGCGGGTGCTTTTTTCAAACGCAACAACAAACAGCATTGGATTATGATCTTGAGGTTATTAAGAACCTGATTAGTAGTAACAGTAATAATGGGTACTTGAGTATTGATGAAAACAAGACGGAGGAGAAGGGTGTGTACTACAACTACTGA 1023 0.4301 MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLLPASHHQRIAPYQQPSPQTPSSFPSHSLPSSIYRDYCNNSHHYYFPAPTSSLACLEPISTPPSNYTNTTTTTSTSTSLPFYQNQEPLSSVSPMQYYTMTDSSMLVFGSETSCSSSDGSCNQVSLGREIKQEDMGFQNFMFGDQHMNKFMISQSNINHDGGEEHVNQWTQKPSGCFFQTQQQTALDYDLEVIKNLISSNSNNGYLSIDENKTEEKGVYYNY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03836 340 PANTHER OS09G0431300 PROTEIN 1 299 - -
Pumo4g03836 340 Gene3D - 69 138 - -
Pumo4g03836 340 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pumo4g03836 340 FunFam Transcription factor RAX3 7 68 - -
Pumo4g03836 340 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo4g03836 340 SMART sant 13 64 IPR001005 -
Pumo4g03836 340 SMART sant 67 115 IPR001005 -
Pumo4g03836 340 FunFam Transcription factor MYB36 70 139 - -
Pumo4g03836 340 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pumo4g03836 340 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo4g03836 340 CDD SANT 16 62 IPR001005 -
Pumo4g03836 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo4g03836 340 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo4g03836 340 Gene3D - 7 68 - -
Pumo4g03836 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pumo4g03836 340 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03836 Pumo-Chr4 78605627 78607466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03836 1 119 MYB Transcription Factor Family AT5G57620 89.916 2.01e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g03836 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03836 K09422 - gmx:100796382 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03836 4 78605627 78607466 Pumo11g01411 11 44386421 44388769 PCT