Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo4g03836 | ATGGGAAGAGCTCCTTGTTGTGATAAGGCAAATGTGAAGAGAGGACCATGGTCACCAGAAGAAGACTCAAAGCTGAAGGATTACATAGAGAAGCACGGCACTGGAGGAAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAAGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCCAACATTAAGCACGGGGAATTCTCCGATGAGGAAGACAGAATAATTTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCCCAGTTGCCAGGCAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAGAGGAAACTCATGGGGTTGCTTCCTGCATCTCATCATCAAAGAATAGCACCCTATCAACAACCCTCCCCTCAGACCCCATCATCATTTCCTTCTCACTCACTACCCTCCTCAATCTACAGAGACTACTGCAACAACTCTCATCATTATTACTTCCCAGCACCAACCTCATCTCTCGCATGCCTTGAACCAATTTCTACTCCTCCAAGTAATTACACAAACACAACAACAACCACCTCCACTTCTACCTCTCTCCCTTTTTACCAAAACCAAGAGCCCTTGTCTAGTGTTAGTCCCATGCAGTATTACACCATGACAGACAGTTCCATGCTCGTGTTTGGAAGTGAAACAAGTTGCAGTTCCTCTGATGGAAGCTGCAATCAGGTTAGCCTTGGCAGAGAGATCAAACAAGAAGACATGGGGTTTCAGAATTTCATGTTTGGAGATCAGCACATGAACAAATTCATGATTAGTCAAAGCAACATTAATCATGATGGAGGTGAAGAACATGTGAACCAATGGACACAGAAGCCAAGCGGGTGCTTTTTTCAAACGCAACAACAAACAGCATTGGATTATGATCTTGAGGTTATTAAGAACCTGATTAGTAGTAACAGTAATAATGGGTACTTGAGTATTGATGAAAACAAGACGGAGGAGAAGGGTGTGTACTACAACTACTGA | 1023 | 0.4301 | MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLLPASHHQRIAPYQQPSPQTPSSFPSHSLPSSIYRDYCNNSHHYYFPAPTSSLACLEPISTPPSNYTNTTTTTSTSTSLPFYQNQEPLSSVSPMQYYTMTDSSMLVFGSETSCSSSDGSCNQVSLGREIKQEDMGFQNFMFGDQHMNKFMISQSNINHDGGEEHVNQWTQKPSGCFFQTQQQTALDYDLEVIKNLISSNSNNGYLSIDENKTEEKGVYYNY | 340 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo4g03836 | 340 | PANTHER | OS09G0431300 PROTEIN | 1 | 299 | - | - | |
Pumo4g03836 | 340 | Gene3D | - | 69 | 138 | - | - | |
Pumo4g03836 | 340 | SUPERFAMILY | Homeodomain-like | 11 | 109 | IPR009057 | - | |
Pumo4g03836 | 340 | FunFam | Transcription factor RAX3 | 7 | 68 | - | - | |
Pumo4g03836 | 340 | ProSiteProfiles | Myb-like domain profile. | 9 | 62 | IPR001005 | - | |
Pumo4g03836 | 340 | SMART | sant | 13 | 64 | IPR001005 | - | |
Pumo4g03836 | 340 | SMART | sant | 67 | 115 | IPR001005 | - | |
Pumo4g03836 | 340 | FunFam | Transcription factor MYB36 | 70 | 139 | - | - | |
Pumo4g03836 | 340 | Pfam | Myb-like DNA-binding domain | 69 | 111 | IPR001005 | - | |
Pumo4g03836 | 340 | Pfam | Myb-like DNA-binding domain | 14 | 62 | IPR001005 | - | |
Pumo4g03836 | 340 | CDD | SANT | 16 | 62 | IPR001005 | - | |
Pumo4g03836 | 340 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 63 | 117 | IPR017930 | - | |
Pumo4g03836 | 340 | ProSiteProfiles | Myb-like domain profile. | 63 | 113 | IPR001005 | - | |
Pumo4g03836 | 340 | Gene3D | - | 7 | 68 | - | - | |
Pumo4g03836 | 340 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 62 | IPR017930 | - | |
Pumo4g03836 | 340 | CDD | SANT | 70 | 113 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo4g03836 | Pumo-Chr4 | 78605627 | 78607466 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo4g03836 | 1 | 119 | MYB Transcription Factor Family | AT5G57620 | 89.916 | 2.01e-78 | 241 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Pumo4g03836 | Myb_DNA-binding | 1.3e-14 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo4g03836 | K09422 | - | gmx:100796382 | 560.066 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo4g03836 | 4 | 78605627 | 78607466 | Pumo11g01411 | 11 | 44386421 | 44388769 | PCT |