Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03828 ATGAACACGATGGATGTTCACCAAGACACACTGACGTACATGAATGATTTTGAACTGTATGACTTTGTTGATGATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCCAACTGTGACTTCAGTTCTGACCTTATCAATGATTGCTTTGCTAACAATCAGCTCCTTCCGTCTCCACATTTAGCTCCTTCTCTTGTTTTGATGGGGAGCTCAAGGGAGAACGGAGAAGGAGAAGGAGAAGAAGAAGAAGAACATGATGGAGAGCATTCTTCTGGAACAACAACGACGACGACGACAACAACAACGACAACTAAGAATGCCGATGCCAAACCAAAACTAAAAACTGATAGGTCCAAGACTCTCATTTCTGAGAGGAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGATAAGGCTTCTATAATTGGAGACGCAGTATCATACGTGCATGACCTTCAGGCTCAAGCTAGGAAGCTGAAGGCTGAGGTAGCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAACTATCAAGGATCAATTAACAAACCCAAAAATATGCAAGTGGCCCGTCTTAGTCATCCAATCTGCAAGAAGATCATGCAGGTGGACATGTTTCAAGTGGAGGAAAGAGGGTATTATGCAAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCTTCACTGTACAGGGCACTTGAGTCTCTTGCAGGTTTTAATGTTCAGAATTCAAACTTGACTACAGTTGGTGACAGTTTTCTACTTACATTTACATTGAATGTAAAAGGAACTGAACCAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTTTCCTGCTTGA 933 0.4234 MNTMDVHQDTLTYMNDFELYDFVDDPNFDQFINLIRGENEDANCDFSSDLINDCFANNQLLPSPHLAPSLVLMGSSRENGEGEGEEEEEHDGEHSSGTTTTTTTTTTTTKNADAKPKLKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLKAEVAGLEASLLVSENYQGSINKPKNMQVARLSHPICKKIMQVDMFQVEERGYYAKIVCNKGEGVAASLYRALESLAGFNVQNSNLTTVGDSFLLTFTLNVKGTEPEINLPNLKLWVTGALLNQGFEFVASFPA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03828 310 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 14 300 - -
Pumo4g03828 310 Pfam Helix-loop-helix DNA-binding domain 127 170 IPR011598 GO:0046983
Pumo4g03828 310 Coils Coil 166 186 - -
Pumo4g03828 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 190 IPR036638 GO:0046983
Pumo4g03828 310 MobiDBLite consensus disorder prediction 96 113 - -
Pumo4g03828 310 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 116 186 - -
Pumo4g03828 310 MobiDBLite consensus disorder prediction 74 127 - -
Pumo4g03828 310 Gene3D - 111 186 IPR036638 GO:0046983
Pumo4g03828 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Pumo4g03828 310 SMART finulus 126 175 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03828 Pumo-Chr4 78502119 78503522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03828 4 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.090 3.32e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g03828 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03828 K26214 - gmx:100805451 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03828 4 78502119 78503522 Pumo4g03828 4 78502119 78503522 ECH
Pumo4g03828 4 78502119 78503522 Pumo11g01396 11 44195137 44196359 PCT