Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03825 ATGTTCTCAGAAATGGACATGGAAGGCATGGGCATGGAGGAACTTGTCTCATCTAACAACGATGCCACCAACATAGCCAAAGGCAGGCGCACAAAGCGGCGCTTGAGGCCTTTGTCTCCTTGTGCGGTTACTGATGCTACCACCACCATCAATGTCACTGCTACCACTGTCACCACCGCAGTCATGACATCTAGCTGTTCAAGTGCTTCTGGCGGCGGTGGATCGTTTTCATCCACCACCTTTGAGGAGGAAGAGGAAGACATGGCTAACTGTTTGATTCTCCTAGCACAAGGAAGAGGAGGAGGGGACCCTCCTCATCACAAGGACCTATGTGGTGGTGATGTTAAGACAGAGAAGGGTAGCACCAAAGTTGATTTATATGTTTATGAGTGCAAAACATGCAACCGAACATTCCCTTCTTTTCAAGCACTGGGTGGCCACAGGGCAAGTCACAAGAAGCCCAAGTTGGAGGAAAAGAAGTCATCATCACCACCGCTGTCGTTGCCGCCGCCACCATCACCAGCATCGCCACTATTTAATTTTGTGGAAGCAAAACAAAATCACATGAAGATTATTAGCCCTTCTGTTTCTCTTCAATTAGGGTGTGGCAATAACAAGGTTGGTTTAAATTTCCATGGGAACAAGTCCAAGATTCATGAGTGCTCCATTTGTGGGTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGAGCATCTACCAATAATAATATAATAATATTGTTCAGACAACAACAACAACTTCTGATGGTGCTGTTGATGTTAAGCCTCGGAATGTTCTAG 816 0.4645 MFSEMDMEGMGMEELVSSNNDATNIAKGRRTKRRLRPLSPCAVTDATTTINVTATTVTTAVMTSSCSSASGGGGSFSSTTFEEEEEDMANCLILLAQGRGGGDPPHHKDLCGGDVKTEKGSTKVDLYVYECKTCNRTFPSFQALGGHRASHKKPKLEEKKSSSPPLSLPPPPSPASPLFNFVEAKQNHMKIISPSVSLQLGCGNNKVGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRASTNNNIIILFRQQQQLLMVLLMLSLGMF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03825 271 Gene3D Classic Zinc Finger 207 260 - -
Pumo4g03825 271 SMART c2h2final6 219 241 IPR013087 -
Pumo4g03825 271 SMART c2h2final6 129 151 IPR013087 -
Pumo4g03825 271 SUPERFAMILY beta-beta-alpha zinc fingers 128 241 IPR036236 -
Pumo4g03825 271 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Pumo4g03825 271 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Pumo4g03825 271 MobiDBLite consensus disorder prediction 145 174 - -
Pumo4g03825 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Pumo4g03825 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Pumo4g03825 271 Pfam C2H2-type zinc finger 219 243 - -
Pumo4g03825 271 Pfam C2H2-type zinc finger 128 154 - -
Pumo4g03825 271 PANTHER ZINC FINGER PROTEIN ZAT5 77 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03825 Pumo-Chr4 78471693 78472876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03825 10 244 C2H2 Transcription Factor Family AT2G28200 42.797 6.02e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g03825 zf-C2H2_6 1.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03825 - - gmx:100788646 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03825 4 78471693 78472876 Pumo4g03825 4 78471693 78472876 ECH
Pumo4g03825 4 78471693 78472876 Pumo5g03097 5 79480984 79482126 ECH
Pumo5g03097 5 79480984 79482126 Pumo4g03825 4 78471693 78472876 ECH
Pumo3g03217 3 59431306 59432332 Pumo4g03825 4 78471693 78472876 ECH