Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo4g03825 | ATGTTCTCAGAAATGGACATGGAAGGCATGGGCATGGAGGAACTTGTCTCATCTAACAACGATGCCACCAACATAGCCAAAGGCAGGCGCACAAAGCGGCGCTTGAGGCCTTTGTCTCCTTGTGCGGTTACTGATGCTACCACCACCATCAATGTCACTGCTACCACTGTCACCACCGCAGTCATGACATCTAGCTGTTCAAGTGCTTCTGGCGGCGGTGGATCGTTTTCATCCACCACCTTTGAGGAGGAAGAGGAAGACATGGCTAACTGTTTGATTCTCCTAGCACAAGGAAGAGGAGGAGGGGACCCTCCTCATCACAAGGACCTATGTGGTGGTGATGTTAAGACAGAGAAGGGTAGCACCAAAGTTGATTTATATGTTTATGAGTGCAAAACATGCAACCGAACATTCCCTTCTTTTCAAGCACTGGGTGGCCACAGGGCAAGTCACAAGAAGCCCAAGTTGGAGGAAAAGAAGTCATCATCACCACCGCTGTCGTTGCCGCCGCCACCATCACCAGCATCGCCACTATTTAATTTTGTGGAAGCAAAACAAAATCACATGAAGATTATTAGCCCTTCTGTTTCTCTTCAATTAGGGTGTGGCAATAACAAGGTTGGTTTAAATTTCCATGGGAACAAGTCCAAGATTCATGAGTGCTCCATTTGTGGGTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGAGCATCTACCAATAATAATATAATAATATTGTTCAGACAACAACAACAACTTCTGATGGTGCTGTTGATGTTAAGCCTCGGAATGTTCTAG | 816 | 0.4645 | MFSEMDMEGMGMEELVSSNNDATNIAKGRRTKRRLRPLSPCAVTDATTTINVTATTVTTAVMTSSCSSASGGGGSFSSTTFEEEEEDMANCLILLAQGRGGGDPPHHKDLCGGDVKTEKGSTKVDLYVYECKTCNRTFPSFQALGGHRASHKKPKLEEKKSSSPPLSLPPPPSPASPLFNFVEAKQNHMKIISPSVSLQLGCGNNKVGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRASTNNNIIILFRQQQQLLMVLLMLSLGMF | 271 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo4g03825 | 271 | Gene3D | Classic Zinc Finger | 207 | 260 | - | - | |
Pumo4g03825 | 271 | SMART | c2h2final6 | 219 | 241 | IPR013087 | - | |
Pumo4g03825 | 271 | SMART | c2h2final6 | 129 | 151 | IPR013087 | - | |
Pumo4g03825 | 271 | SUPERFAMILY | beta-beta-alpha zinc fingers | 128 | 241 | IPR036236 | - | |
Pumo4g03825 | 271 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 221 | 241 | IPR013087 | - | |
Pumo4g03825 | 271 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 131 | 151 | IPR013087 | - | |
Pumo4g03825 | 271 | MobiDBLite | consensus disorder prediction | 145 | 174 | - | - | |
Pumo4g03825 | 271 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 129 | 156 | IPR013087 | - | |
Pumo4g03825 | 271 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 219 | 246 | IPR013087 | - | |
Pumo4g03825 | 271 | Pfam | C2H2-type zinc finger | 219 | 243 | - | - | |
Pumo4g03825 | 271 | Pfam | C2H2-type zinc finger | 128 | 154 | - | - | |
Pumo4g03825 | 271 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 77 | 245 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo4g03825 | Pumo-Chr4 | 78471693 | 78472876 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo4g03825 | 10 | 244 | C2H2 Transcription Factor Family | AT2G28200 | 42.797 | 6.02e-42 | 143 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pumo4g03825 | zf-C2H2_6 | 1.8e-11 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo4g03825 | - | - | gmx:100788646 | 300.056 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo4g03825 | 4 | 78471693 | 78472876 | Pumo4g03825 | 4 | 78471693 | 78472876 | ECH | |
Pumo4g03825 | 4 | 78471693 | 78472876 | Pumo5g03097 | 5 | 79480984 | 79482126 | ECH | |
Pumo5g03097 | 5 | 79480984 | 79482126 | Pumo4g03825 | 4 | 78471693 | 78472876 | ECH | |
Pumo3g03217 | 3 | 59431306 | 59432332 | Pumo4g03825 | 4 | 78471693 | 78472876 | ECH |