Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03824 ATGATTTCAAGGGCCACATCTAGCTTCCAAAGTGTCCACCAAGGGCTTCAGATGTTCCCTGACCCTGAAGATTTTGTGCCAACCTCTGTGGAATCTGGCTCAGGTTCACACTCTAGTTCCCTCCTCTTCAATCTCTCTATCCTGAAGGACAAGCTTAGTGAGGTGCAGACCCTGGTAGGTGTTATTCTCTCCCCAAATCAAAGGCTACCAGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCATGGTCACTGCCACATCAATGATGTTCACCTGCCAACAGATGGCCCTCACTACCCCTCCAGGTAATAATAACACCACCACATGCACCAACAAATTGCACCAGCAGAATAAGTTGCCTCACTCAAATAATTTTGACACAAATAGAAGTGTGCTTGGTAACATAGGCATAGATACTAGTGACCATCAGGGTTTATTTTCTAGTACTGAGTCAGAGGCATTGGACTGGTTTAGTGAAAGCTATAACAATAACAATGATAATAGCAACATTAGTAAGATTAAGGAAGATGATCCAAGTGTTGCAATTAGTGAAAACAATATTAATAGAGGAGGAGTACTATCTCCAAGGGATGAAGAAGGGTATAGAGGGCTTTCACCAAAGAATATTAATAGTGATATAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACGCATTATTGCCAAGTTTGTGGCAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACCAATGCTGCTTTGAGTAACCCAATTAAGAAGAACAAGGGGAACTTATTGGAAGGGGGACGAGAGTGTTTGATGAGTAGTGTGAAGCCAAAGAGATATTCGTGTCCTCAAGAAGGGTGTAGGTGGAACCAAAGGCATGCCAAGTTCCAGCCATTGAAGTCCATGATTTGTGCCAAGAACCATTACAAGAGAACCCATTGCCCCAAAATGTACGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTCTCTGATCTTAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGCTCGTGTGGCACCTCGTTTTCTAGAAAAGACAAGCTTATGGGTCATGTGGCTTTGTTCGTGGGGCACCAACCAGCTATCAACAATGGTCTCTCTTACTCGGGAAAATTATAG 1194 0.443 MISRATSSFQSVHQGLQMFPDPEDFVPTSVESGSGSHSSSLLFNLSILKDKLSEVQTLVGVILSPNQRLPESTSMAISSMNSTIQEIMVTATSMMFTCQQMALTTPPGNNNTTTCTNKLHQQNKLPHSNNFDTNRSVLGNIGIDTSDHQGLFSSTESEALDWFSESYNNNNDNSNISKIKEDDPSVAISENNINRGGVLSPRDEEGYRGLSPKNINSDIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKKNKGNLLEGGRECLMSSVKPKRYSCPQEGCRWNQRHAKFQPLKSMICAKNHYKRTHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVALFVGHQPAINNGLSYSGKL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03824 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Pumo4g03824 397 Gene3D Classic Zinc Finger 214 280 - -
Pumo4g03824 397 Gene3D Classic Zinc Finger 329 379 - -
Pumo4g03824 397 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 388 IPR044300 GO:0010044|GO:0010447
Pumo4g03824 397 SMART c2h2final6 233 255 IPR013087 -
Pumo4g03824 397 SMART c2h2final6 331 353 IPR013087 -
Pumo4g03824 397 SMART c2h2final6 293 326 IPR013087 -
Pumo4g03824 397 SUPERFAMILY beta-beta-alpha zinc fingers 231 258 IPR036236 -
Pumo4g03824 397 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Pumo4g03824 397 FunFam Zinc finger protein 574 232 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03824 Pumo-Chr4 78457844 78459424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03824 38 386 C2H2 Transcription Factor Family AT5G22890 47.740 1.09e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g03824 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03824 - - gmx:100802769 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03824 4 78457844 78459424 Pumo4g03824 4 78457844 78459424 ECH