Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03820 ATGACGCCAAAATTGTTTAGCAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATTTGCGCTTGCACAAGTTGGTATTTGAAGCAGATGTGTTGCCAGATGGAACTGAACTAGCCTACTATGCTCATGGACAGAAACTGTTGGTTGGTTACAAAAAGGGATATGGAATTTTTTGTACCTGCTGCAATGAGCAGGTCAGTGCCTCTCAGTTTGAAGCTCATGCTGGTTGGGCATCTCGACGCAAGCCTTACCTACACATATACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTTTATCAAAAGATCGGAGGTTTTCCAACAATGACAATGATGATCTCTGTATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGATTGTGTCCCTTTACCATGCATTCCTAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAAGACAGGCATGGGCAACATGATGTGAATGCTCTGGCAGCTGCTGGAAGGATTGCAGGCCCTGATATTTTGGAATTGATGAACAAAAGATGCATTCGTGTTGTCAAAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCACAATTTCAGTAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGTTTGAAGGATCATAACATGGAGAACCTAGAGGAATTGCCTGAAGGAAATTGGTTCTGTGGCTCAAATTGCAAGCAAATTCATACTGCTTTGACGGATCTGGTGGCTGATAAGGAGAAGAATGTCCCAGATTCCCTTCTAAGTTTGATTAAAAAGAAGCATGAAGAGAAAAGTTTAGACATTGGAGCTGGTCTTGATGTTAAATGGAGGGTTATGAACTGGAAATTAGATTCTGATTCTGTTGAAACTAGGAAATTGCTTTCAAAAGCTGTTGCCATTTTCCATGAGAGGTTTGATCCTATAGTTGATTCAACATCTGGCCGTGATTTCATTCCAACAATGTTGTTTGGAAGGAATATTCGGGGTCAAGATTTTAGTGGAATATACTGTGCAGTGCTTACTGTCAACGGGGAATATTGTGTCTGCTGGAGTATTTCGTGTCTTTGGGGTTATTTTCAGTGCTTGTTTTCTTGTATCGAGACGCTACTTGGATCTTTAAATGTGAAAAACCTTGTCCTACCAGCTGCTGATGAAGCTGAATCAATATGGACTGGTAAATTTGGGTTTACAAAGCTATCACAAGATGAGGAATTAAAGGAGGTTAGAGTTGAAAATAGAGGAAGAAGATTCAATTTGAGGATTAGCGAGGACGATAATGCGGTGCACGTGCATCTGGTGATGGAGCTCTGCCACAAGCACGGACCCGATAATTTCTTATTGGGCTCTCGACTCGAGGCCATTGATTTTTGGCTCTCCATTTTCATTAAGCTTGCTAGGGGATTAGGGAAGATATATCGTGAACGGTTTGGATGTAGCATTGAACTACTGCATGTCCCTCTTGGTTACCGGTTAGTGAATGAGAAAATGTTCATACAACACTTCTTCAGTATGTTTAGACGAGAAAGAAGGAAAGGCAACATATGA 1656 0.4143 MTPKLFSNGMKHSASRGKSQGRLTRKDLRLHKLVFEADVLPDGTELAYYAHGQKLLVGYKKGYGIFCTCCNEQVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVFQKDRHGQHDVNALAAAGRIAGPDILELMNKRCIRVVKTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMENLEELPEGNWFCGSNCKQIHTALTDLVADKEKNVPDSLLSLIKKKHEEKSLDIGAGLDVKWRVMNWKLDSDSVETRKLLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGIYCAVLTVNGEYCVCWSISCLWGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLSQDEELKEVRVENRGRRFNLRISEDDNAVHVHLVMELCHKHGPDNFLLGSRLEAIDFWLSIFIKLARGLGKIYRERFGCSIELLHVPLGYRLVNEKMFIQHFFSMFRRERRKGNI 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03820 551 SUPERFAMILY FYVE/PHD zinc finger 207 266 IPR011011 -
Pumo4g03820 551 CDD PHD1_AIRE 124 164 - -
Pumo4g03820 551 MobiDBLite consensus disorder prediction 1 17 - -
Pumo4g03820 551 MobiDBLite consensus disorder prediction 1 22 - -
Pumo4g03820 551 Pfam Tify domain binding domain 58 106 IPR032308 -
Pumo4g03820 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 189 IPR013083 -
Pumo4g03820 551 ProSitePatterns Zinc finger PHD-type signature. 125 164 IPR019786 -
Pumo4g03820 551 SMART PHD_3 124 165 IPR001965 -
Pumo4g03820 551 SMART PHD_3 213 269 IPR001965 -
Pumo4g03820 551 ProSiteProfiles Zinc finger PHD-type profile. 122 167 IPR019787 -
Pumo4g03820 551 PANTHER AUTOIMMUNE REGULATOR 7 446 - -
Pumo4g03820 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 271 IPR013083 -
Pumo4g03820 551 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 111 189 - -
Pumo4g03820 551 SUPERFAMILY FYVE/PHD zinc finger 111 166 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03820 Pumo-Chr4 78427181 78433644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03820 22 454 PHD Transcription Factor Family AT2G36720 51.770 1.43e-161 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03820 - - gmx:100803825 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03820 4 78427181 78433644 Pumo4g03820 4 78427181 78433644 ECH
Pumo4g03820 4 78427181 78433644 Pumo11g01388 11 44115649 44122838 PCT