Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03817 ATGACTGGAAGTGACTGGCATCAAAGTGTGGATGATAATCAGCTCAGTAGCACAACAAATGAGTGGCCCCAAAACATATTGGGAAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCTGAAGATGACAATGTATACAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGCGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACATTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACAAGACTCAGGGCAACAGAGTAGTGATCCAATTGTTGGTCATCAGGCTACTGTTAATAGCTCACTTGACCGACCTTTGCCACCAACACCTCCACCTCAGCCTTTATGGGATCGGCACTCACGTCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCTTAGGAATTGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAACAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTAAATCGCTCAACTGGTTCATCAGGAATACATGACCATGTTTCACCAGATGATAAATCTAAATGGGAATGTGTGAGGAAAGGACTTTGTTGTATATGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCATATGTGCACATGTTCGAAATGTGCCAATGATTTGCTCCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGAGCTTATTCCATACAATAG 987 0.4336 MTGSDWHQSVDDNQLSSTTNEWPQNILGSEDGENSRMQEQEAPEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHIEWELQETTPSSPLAEQDSGQQSSDPIVGHQATVNSSLDRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGIHDHVSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLLQSRRKCPMCQAPVVEVIRAYSIQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03817 328 MobiDBLite consensus disorder prediction 160 185 - -
Pumo4g03817 328 SUPERFAMILY RING/U-box 275 321 - -
Pumo4g03817 328 Pfam Zinc finger, C3HC4 type (RING finger) 273 320 - -
Pumo4g03817 328 MobiDBLite consensus disorder prediction 1 33 - -
Pumo4g03817 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 326 IPR013083 -
Pumo4g03817 328 ProSiteProfiles Zinc finger RING-type profile. 276 315 IPR001841 -
Pumo4g03817 328 MobiDBLite consensus disorder prediction 1 48 - -
Pumo4g03817 328 MobiDBLite consensus disorder prediction 135 154 - -
Pumo4g03817 328 Coils Coil 204 231 - -
Pumo4g03817 328 CDD mRING-HC-C3HC5_NEU1 276 325 - -
Pumo4g03817 328 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03817 Pumo-Chr4 78412696 78414129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03817 276 322 C3H Transcription Factor Family AT3G06140 38.298 2.74e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03817 - - gmx:100804887 615.535