Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03815 ATGGATCTCTTATCTTGTATTTCTCAGGAATTCATGTCAATGCCACCATGGCTGAAAGCATTGCTATCAATTACTACATTTTTTTCTGAATGTCCAATTCACACTGAACGTCTCAAAAGGGAATGCAATATGTATTGCTTTGATTGTAGTGACGACAAACCATTATGCTTCAAGTGCATACAATCCTGTCACAAGGACCATCGATCAATTCAGATCCTGACAAGTGTAAGTGCAATGCAGATAAGAAAATCATCGTATCACAATGTCGTTAGAACAGAAGATATTGAAAATTACTTGGATATCACTTGGATTCAAACATATTCGATTAACAGCTTTAGTGTCGTTTTTCTGAACAAGAGGGATGTTGACAAGCCTAATGTCCAAAGGACTGGTAAAAGTTGCAAACACACTTCCCAGTGTAAAACATGCAGAAGAAATATCTCGGATTCTTTTCGTTTTTGCTCTTTGGGATGTAAGAGCAATCACTAG 489 0.3701 MDLLSCISQEFMSMPPWLKALLSITTFFSECPIHTERLKRECNMYCFDCSDDKPLCFKCIQSCHKDHRSIQILTSVSAMQIRKSSYHNVVRTEDIENYLDITWIQTYSINSFSVVFLNKRDVDKPNVQRTGKSCKHTSQCKTCRRNISDSFRFCSLGCKSNH 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03815 162 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 12 159 - -
Pumo4g03815 162 Pfam PLATZ transcription factor 82 159 IPR006734 -
Pumo4g03815 162 SUPERFAMILY B-box zinc-binding domain 30 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03815 Pumo-Chr4 78393205 78394357 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Pumo4g03815 PLATZ 4.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03815 - - ming:122087485 148.288