Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03806 ATGGCGGAGGACCGTAGTGAGGTGAGTGATTACAGTTCGGAGGACGAAGGAACCGAAGATTACAGGCGCGGAGGGTACCATGCGGTTCGGATTGGTGACACTTTCAAGAATGGGTGCTATGTGGTGCAGAGCAAGCTTGGTTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGACACTCACAAATCGCGATATGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCATTACACTGAAGCAGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGATGGGGATCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTTAAGCATTCGGGACCTAATGGACAGCATGTTTGTATGGTTTTTGAATTCCTTGGGGATAATCTTCTCACACTTATCAAGTATAGTGATTATCGAGGGGTTCCCCTTCCCATGGTCAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCATCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCTGAGAATGTCTTGCTTCTGTCTCCAATAGACCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACGAAGGATAAGACTGTGACCAAGAATGGGACCACGATAGCAAATAGAAGTTTGAATGGAGATCTGACCAAGAACCAGAAAAAGAAACTGCGGAAAAAGGCTAAAAAGGCAGCTCAAGGTGCTGGGAGGGAAAATGCTGAGGAAGCTGAGGAGGATTCCAAAGTTCCTGATGAGCAAGATGATTGTAGTAATGATGTGAAACCAAGTGTAGAATCTGGTGAAGTTAAACCTAGTAGTCCTGTGAGTAAAGATGAATCAACAAAGACTTCTGAAAATAAAGATATTCCACAAGGAAGTCATGGTAATAGAAGAGGTAGCTGCTCTACAAGAAAGAAGTTGCTTGCAGCTGTTGATCTTAAGTGCAAACTGGTTGATTTTGGTAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCTCTGGCGATGTTCTTTTTGATCCTCATAGTGGTGACAACTACGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGCCGCTATTCCCGAGATTTTTTCAATAGATACGGTGATTTGAGGCACATCCGTCGGTTGCGTTTCTGGCCTCTTAATAAGGTGCTGACGGAGAAGTATGATTTCAGTGAACAAGATGCAAGTAACATGGCTGACTTCCTTCTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACTGCTGCACAATGCCTTCAGCATCCGTGGTTCAGTGCTGGTCCCCGGACTCTTGAGCCCTCATTAACTACTGTGCAGCATGATGCTATTGCCGGGGAAATATCTGAAAAGATGCAGAGGGAAATGGCTGAGCAGGAGGCTGTGGAAGTTGGTATGGGGAAAATGACCATAGATGGAAATCCAAAGCCACTCAAAGTGTTCCAATCTATGAAGCCATCAGAATAG 1635 0.4373 MAEDRSEVSDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTHKSRYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNTKDKTVTKNGTTIANRSLNGDLTKNQKKKLRKKAKKAAQGAGRENAEEAEEDSKVPDEQDDCSNDVKPSVESGEVKPSSPVSKDESTKTSENKDIPQGSHGNRRGSCSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELASGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLTEKYDFSEQDASNMADFLLPLLDFVPEKRPTAAQCLQHPWFSAGPRTLEPSLTTVQHDAIAGEISEKMQREMAEQEAVEVGMGKMTIDGNPKPLKVFQSMKPSE 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03806 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Pumo4g03806 544 Pfam Protein kinase domain 318 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03806 544 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03806 544 FunFam Serine/threonine-protein kinase SRPK-like protein 311 481 - -
Pumo4g03806 544 CDD STKc_SRPK 29 481 - -
Pumo4g03806 544 FunFam CMGC/SRPK protein kinase 26 125 - -
Pumo4g03806 544 Gene3D Transferase(Phosphotransferase) domain 1 123 482 - -
Pumo4g03806 544 ProSiteProfiles Protein kinase domain profile. 40 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03806 544 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 501 - -
Pumo4g03806 544 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Pumo4g03806 544 SMART serkin_6 40 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03806 544 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Pumo4g03806 544 MobiDBLite consensus disorder prediction 202 221 - -
Pumo4g03806 544 SUPERFAMILY Protein kinase-like (PK-like) 35 491 IPR011009 -
Pumo4g03806 544 MobiDBLite consensus disorder prediction 181 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03806 Pumo-Chr4 78220082 78224434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03806 6 532 EF-hand Containing Proteins AT5G22840 70.245 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Pumo4g03806 Pkinase 1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03806 K08832 - gmx:100791829 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03806 4 78220082 78224434 Pumo4g03806 4 78220082 78224434 ECH