Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03797 ATGGGGAGCAAGGTGAGCGACCACCACTTATCCACAGTCCGATCCATCGTGGGTTCCGAATTCACCGACATGGACATCATCAGAGCCCTCCACATGGCCAAAAACGACGTCACTGCAGCCATCAACATCATCTTCGACACTCACACCGCCCCAAAATTCAAGCCCACGCGCCCCACCAATCCCCGACCAGTTTCTCCTCCAAAACCGACCCCTCCCACTCCCACACCCACACCCACCGTCACCGCCAACTCAAACCACAGCGTCGGTGAACGACACAGCAATGATAACCGCGACGATTGGTGGTTCGTGAGTTGTGGCGAAATGACGGGTTTGTCCACGTGTAAAGGGAGGACTATAAGCTCCGGCGAGACCGTGGTTTTCAAGTTTCCGGCGAAGAAGCTCTCCGCTTCGCCCTCTCCGGGGAAGGGGTTCGGACGGGCAGCGACTTGTTCGGAGATAGTGCGATTCTCCACAGAACAAGCTGGGGAGATTGGTAGAATACCGAATGAATGGGCTCGGTGTCTTTTGCCTCTCGTGCGGGATCATAAGGTTAGGATTGAGGGGCAGTGTAAATATGCGCCTAAAGTTTTGGGCATCATGGATTCCATTGTTTTGTCAGTGAGTGTATTTATCAATAGTTCGATGCTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCCACTGATGAATCAGTGTTTCATCCACTTCCAACTTTGTTTCGGTTGCTAGGTTTAAACCCTTTTAAGAAGGCGGAGTTAACTCCTGGTGATTTCTATTCCAACAAACGTCCTCTCACTCAAAGGGTCACATTACCACGTGCCAAGTCTGAGCATCCTTCTCAAAATGGTCATGAGAATGACAATGAGGATTCCATTTCTGAAATTGATGTTGAGAACATTGTTGGTGTTGGATCAAGCTCAGAGTTAGAGGAAATGGACCCCCCTGGTAATCTTATGTGTGAACTGCGGCCCTATCAAAAGCAGGCGCTTTACTGGATGATCCAGATGGAGAAGGGACAATCTATGGATGAGACAGCAACAACCCTCCATCCATGTTGGGAGGCATACCACCTGGCTGACAAGAGGGAGCTTGTTATTTATTTGAATGCGTTTTCTGGTGAAGCCACAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACTATCATGACCATATCCCTTCTCGTTGCCCATTCAGGAAAGGGTGGATCAATAGGCAGTCAACCCATAACCCAATCCTTTATTGAAGGCGGTGAAGTTAGTGATACAGTGCATAATTTTTCAAACATACCCAAGAAGGCAACCAAATTTGCTGGTTTTGATAAACCGATGAAGCAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGTTTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAATGTCTCGCCCAAAGTGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGCGAGAATGCAGAGGATAATGTTGGACTCTTCTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAATTTCTTTAGCAGCTGCTACTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACCCCGATTCAGAACAGCCTTGAGGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTGACGTTAGTTCAATCAATTTTGAAGCCAATCATGTTGAGGAGAACTAAACATAGCACAGATCGAGAGGGCAAGCCCATCCTAGTTCTTCCTCCAGCTGATATGCAGGTAATTTACTGTGAACCCACAGAAGCTGAAAAGGACTTCTATGGAGCCCTTTTCAAAAGATCTAAGGTAAAATTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCGGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACCTATAGTGCTTCAGAAGGTGAAGTAAAAGATACACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAGCAAGGAGAGTGTCCAATATGTCTTGAAGTATTTGAAGATGCAGTCTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAGGAAAACAATCAGCAGACAGGATCTTATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCTTGCAAGGTAACTTTTCTTTTGAATGAACTTGAAAATCTTCGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAACATTTCGTTTGTTCGTCTTGATGGGACTTTGAATCAGCAGCAGCGGGAAAAAGTAATCAAGCAATTCTCTGAAGACAGCAACACCCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAGGGGACAGTGGAGGAGAGAATGGAGGCAGTGCAAGCACGCAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCAAGGATTGAGGAGTTGAAGATGCTTTTTACTTAG 3024 0.4544 MGSKVSDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHTAPKFKPTRPTNPRPVSPPKPTPPTPTPTPTVTANSNHSVGERHSNDNRDDWWFVSCGEMTGLSTCKGRTISSGETVVFKFPAKKLSASPSPGKGFGRAATCSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDHKVRIEGQCKYAPKVLGIMDSIVLSVSVFINSSMLGKHHQVSLKDAANSTDESVFHPLPTLFRLLGLNPFKKAELTPGDFYSNKRPLTQRVTLPRAKSEHPSQNGHENDNEDSISEIDVENIVGVGSSSELEEMDPPGNLMCELRPYQKQALYWMIQMEKGQSMDETATTLHPCWEAYHLADKRELVIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGGSIGSQPITQSFIEGGEVSDTVHNFSNIPKKATKFAGFDKPMKQKNALTSGGNLIICPMTLLGQWKAEIETHVHPGFLSLYVHYGQSRPKDAKCLAQSDVVITTYGILASEFSSENAEDNVGLFSIRWFRVVLDEAHTIKSSKSQISLAAATLIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLTLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQVIYCEPTEAEKDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTYSASEGEVKDTPSRAYVQEVVEELRKGEQGECPICLEVFEDAVLTPCAHRLCRECLLSSWRNATSGLCPVCRKTISRQDLITAPTENRFQVDIEKNWVESCKVTFLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNQQQREKVIKQFSEDSNTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03797 1007 Coils Coil 999 1007 - -
Pumo4g03797 1007 SMART helicmild6 871 954 IPR001650 -
Pumo4g03797 1007 SMART ring_2 772 811 IPR001841 -
Pumo4g03797 1007 MobiDBLite consensus disorder prediction 274 296 - -
Pumo4g03797 1007 CDD DEXDc_SHPRH-like 325 638 - -
Pumo4g03797 1007 SMART ultradead3 321 622 IPR014001 -
Pumo4g03797 1007 Pfam HIRAN domain 107 207 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pumo4g03797 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 996 IPR027417 -
Pumo4g03797 1007 Pfam Helicase conserved C-terminal domain 842 954 IPR001650 -
Pumo4g03797 1007 Gene3D - 382 650 IPR038718 -
Pumo4g03797 1007 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 383 600 IPR014001 -
Pumo4g03797 1007 Pfam SNF2-related domain 328 716 IPR000330 GO:0005524|GO:0140658
Pumo4g03797 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 836 IPR013083 -
Pumo4g03797 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 638 IPR027417 -
Pumo4g03797 1007 Pfam Zinc finger, C3HC4 type (RING finger) 772 811 IPR018957 GO:0046872
Pumo4g03797 1007 MobiDBLite consensus disorder prediction 56 78 - -
Pumo4g03797 1007 SUPERFAMILY RING/U-box 760 818 - -
Pumo4g03797 1007 CDD SF2_C_SNF 838 965 - -
Pumo4g03797 1007 ProSitePatterns Zinc finger RING-type signature. 787 796 IPR017907 -
Pumo4g03797 1007 MobiDBLite consensus disorder prediction 50 93 - -
Pumo4g03797 1007 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 842 1007 IPR001650 -
Pumo4g03797 1007 ProSiteProfiles Zinc finger RING-type profile. 772 812 IPR001841 -
Pumo4g03797 1007 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 93 1007 - -
Pumo4g03797 1007 SMART HIRAN_2 103 211 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pumo4g03797 1007 Gene3D - 654 1007 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03797 Pumo-Chr4 78142586 78150274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03797 1 1007 RAD5 or RAD16-like Gene Family AT5G22750 70.487 0.0 1498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo4g03797 SNF2_N 2.2e-83 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03797 K15505 - gmx:100794558 1904.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03797 4 78142586 78150274 Pumo4g03797 4 78142586 78150274 ECH