Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03789 ATGCAGCATCATCTGATACCTTTGGTTTTCAATTTAGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAGGTAGACCCAGCTGAATTCGAGGCATGCATTCACCTTTCTCAGGTTAGGGTTCCCGTCTGTGTGTATTTTTATTTTTATTTTTTCTGCGTAGACAACATATCTGACATGTTGCTGTGTAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAGTCCAAATGAACCGGTGGTTCTCTACTTGAAAGTTGGTGAACAGAAATTTGTCTTGGGAACCCTTTCGAGGGAGAAAATTCCTCAAATATCTCTGGAATTGGTTTTAGAAAAGGAGTTTGAGCTTTCCCACAATTCAAAGAATGCCAGCGTTTATTTCTGTCTAACATTTGCATTTTTTTTTAATTGGACAGATAGCGATGAGGATGTTCCATTGATTAATGCAGAGAATGGAAAACCTGAAACTAAAGCTGGAGACTTGAAGGTACCTGAATCTAAAAAACCTGATGCCAAGGCTAGTGCATCAGCAAAACAGGTTAAGGTTGTTGAACCAAAAAAAGACAATGAGGAGGACTCTGATGATGATTCTGACGAAGATGATGATTTTGGAAGTTCTGATGATGAGATGGAGGATGCTGATAGTGACAGTGATGAGGAGGGTGATAGTGATGAAGATGATGACGAAGAGACCCCTCCTAAGAAGGCGGATCTGGGAAAGAAGAGAGCTAATGAGTCTGCATCAAAAACTCCAGTTTCCTCTAAGAAAGCTAAAAATGCTACTCCTGAAAAGACTGATGGTAAGAAAGGTGGACATACAGCAACTCCTCACCCTGGGAAGAAAGGTGGAAAGACTCCCAACAGTGATGCCAAGACTCCCAACAGTGATGCCAAGACTCCCAAGTCTGGTGGACTCTCTTGCAAAAGCTGCAACAGGTCTTTCAACTCTGAAAGTGGTCTGCAACAACATAACAAGGCAAAGCATGGTGGTCAGTGA 990 0.4242 MQHHLIPLVFNLGAEVKVGESVKVDPAEFEACIHLSQVRVPVCVYFYFYFFCVDNISDMLLCRLLLVRQRKTSPNEPVVLYLKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHNSKNASVYFCLTFAFFFNWTDSDEDVPLINAENGKPETKAGDLKVPESKKPDAKASASAKQVKVVEPKKDNEEDSDDDSDEDDDFGSSDDEMEDADSDSDEEGDSDEDDDEETPPKKADLGKKRANESASKTPVSSKKAKNATPEKTDGKKGGHTATPHPGKKGGKTPNSDAKTPNSDAKTPKSGGLSCKSCNRSFNSESGLQQHNKAKHGGQ 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03789 329 SUPERFAMILY beta-beta-alpha zinc fingers 291 325 IPR036236 -
Pumo4g03789 329 Gene3D Nucleoplasmin core domain 10 129 - -
Pumo4g03789 329 MobiDBLite consensus disorder prediction 285 323 - -
Pumo4g03789 329 ProSitePatterns Zinc finger C2H2 type domain signature. 305 326 IPR013087 -
Pumo4g03789 329 MobiDBLite consensus disorder prediction 153 172 - -
Pumo4g03789 329 MobiDBLite consensus disorder prediction 146 329 - -
Pumo4g03789 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 303 329 IPR013087 -
Pumo4g03789 329 MobiDBLite consensus disorder prediction 187 229 - -
Pumo4g03789 329 MobiDBLite consensus disorder prediction 257 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03789 Pumo-Chr4 78019007 78021765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03789 12 326 C2H2 Transcription Factor Family AT5G03740 34.940 1.20e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g03789 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03789 - - gmx:100795506 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03789 4 78019007 78021765 Pumo4g03789 4 78019007 78021765 ECH