Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03780 ATGAATTTTGAGATCGAATCCCCGTTTTCATTTCAATCTTGCTCTCCCTTTTCCCAATCATCATCATCATGCACACCACCTGATATTAATAACCCTAACCTAATATTTTCAGAACCATCATCATCGCATGCACAAATTGTATCACACAAAAGGAAAGGTGGAAGGAAGAAGTTCAAGGAAACTCGGCACCCAATTTATAGGGGTGTCCGACAAAGGAAGGGGAAGTGGGTTTGTGAGCTTAGGGAACCAAAGAAAACTAGAAGGATTTGGTTAGGGACATACCCTACACCTGAAATGGCAGCTAGGGCACATGATGTGGGAGCCCTAGCCATTAGGGGCACCTCAGCGGTTCTAAACTTTCCAAACTCAGCTTCCCTTCTTCCAATCGCTAACTCATTATCTTTACCCAAAGATATTCGAGCAGCAGCAGCAGAAGCCGCCGAGAGTTTCAGACCAATCACCATGTCCAATTCTCATCGCAAAACTAAGTGTAAGAGAGTTAAAAAGGCAATTCCATCATCAAAAATAGAGGAAACAACAAAGGAAACGGTGTTGGACTCGTCCTGCTTGAAGAGCATGCATAATTTGGACCGTGAAAGATGTGATGTGAATATCTTCAACAGTGGCAGCACAGAGAAAAACAGCAATTTGGATTTGGATCTGTCTTCAACAGTGTTCTTCGATGAGGAGGCATTGTTTAACATGCCGGGTCTCTTGGATAGAATGGCTGAGAGTTTGGGTCTCTTCCCACTACTACCATCAGTGGATTATTATTGGGATGATCATGCTTATTGCACAGACTTCAATTTATGGACCGATTAA 822 0.4294 MNFEIESPFSFQSCSPFSQSSSSCTPPDINNPNLIFSEPSSSHAQIVSHKRKGGRKKFKETRHPIYRGVRQRKGKWVCELREPKKTRRIWLGTYPTPEMAARAHDVGALAIRGTSAVLNFPNSASLLPIANSLSLPKDIRAAAAEAAESFRPITMSNSHRKTKCKRVKKAIPSSKIEETTKETVLDSSCLKSMHNLDRERCDVNIFNSGSTEKNSNLDLDLSSTVFFDEEALFNMPGLLDRMAESLGLFPLLPSVDYYWDDHAYCTDFNLWTD 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03780 273 CDD AP2 64 123 IPR001471 GO:0003700|GO:0006355
Pumo4g03780 273 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 272 IPR045277 GO:0003700
Pumo4g03780 273 Gene3D AP2/ERF domain 65 122 IPR036955 GO:0003700|GO:0006355
Pumo4g03780 273 Pfam AP2 domain 64 113 IPR001471 GO:0003700|GO:0006355
Pumo4g03780 273 ProSiteProfiles AP2/ERF domain profile. 65 121 IPR001471 GO:0003700|GO:0006355
Pumo4g03780 273 MobiDBLite consensus disorder prediction 14 33 - -
Pumo4g03780 273 SMART rav1_2 65 127 IPR001471 GO:0003700|GO:0006355
Pumo4g03780 273 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03780 Pumo-Chr4 77870710 77871531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03780 50 272 AP2-EREBP Transcription Factor Family AT5G51990 40.625 1.46e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g03780 AP2 8.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03780 - - vra:106758292 349.362