Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03778 ATGGATGTAACAAGGAACAAAGTGGTGGAAAGTGAATCTCCCTATTATTACTATTTATCTTCATCACCGTCATCCACCTCTTCTCAAAGCCAACTCTCATCACCGTGCAACGTGAATTCTCTACCAGATCATTCATCATCGCATGCACAAACAACAGAGGCAGTGGTGTTGAGCTCTCACAAGAGGAAAGCGGGGAGAAAGAAGTTTCGAGAGACACGTCACCCGGTGTATAGAGGGGTTCGGCAGAGGAACGGTAACAGATGGGTGTGTGAGGTTCGTGAGCCGAACAAGAAGTCGAGGATATGGCTTGGGACATACCCTACGCCAGAGATGGCAGCTAGGGCACATGACGTGGCTGTCCTAGCACTTAAGGGCACCTCTGCTGTGTTCAATTTTCCTGATTCAGTTTCTCTTCTTCCGGTTGCAAAGTCATCTTCAGCTGCAGATATAAGAGTTGCTGCATCAAAAGTATCAAAGGTTTTTGGCCCTTCTTCTTCCTCAGTAACATTAACCAGTTCTTCATCATCTAATTCCCGGGTCGAGACTAAGCCTTGTTTGGTTGATGATTTTGTTATGACTACGAATAATGATATTGATGAGGCCAAATCAGTGTTTTTTGATGAGGAGGCGTTCTATAATATGCCAGGTTTGTTAGATAGTATGGCAGAGGGTTTGCTTATTACTCCACCGTCTATGAAGAGAGCATTTGATTGGGACGAGCTTGATTGTGAAACAGATCTCACTCTCTGGAAAGATTAA 759 0.4453 MDVTRNKVVESESPYYYYLSSSPSSTSSQSQLSSPCNVNSLPDHSSSHAQTTEAVVLSSHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEVREPNKKSRIWLGTYPTPEMAARAHDVAVLALKGTSAVFNFPDSVSLLPVAKSSSAADIRVAASKVSKVFGPSSSSVTLTSSSSSNSRVETKPCLVDDFVMTTNNDIDEAKSVFFDEEAFYNMPGLLDSMAEGLLITPPSMKRAFDWDELDCETDLTLWKD 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03778 252 MobiDBLite consensus disorder prediction 25 57 - -
Pumo4g03778 252 SUPERFAMILY DNA-binding domain 76 135 IPR016177 GO:0003677
Pumo4g03778 252 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Pumo4g03778 252 Gene3D AP2/ERF domain 76 134 IPR036955 GO:0003700|GO:0006355
Pumo4g03778 252 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Pumo4g03778 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 25 251 IPR045277 GO:0003700
Pumo4g03778 252 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Pumo4g03778 252 CDD AP2 77 135 IPR001471 GO:0003700|GO:0006355
Pumo4g03778 252 FunFam Ethylene-responsive transcription factor 2 75 134 - -
Pumo4g03778 252 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Pumo4g03778 252 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Pumo4g03778 252 MobiDBLite consensus disorder prediction 25 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03778 Pumo-Chr4 77816964 77817722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03778 40 250 AP2-EREBP Transcription Factor Family AT5G51990 44.186 1.23e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo4g03778 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03778 - - gmx:100816109 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03778 4 77816964 77817722 Pumo4g03778 4 77816964 77817722 ECH
Pumo4g03778 4 77816964 77817722 Pumo11g01350 11 43454585 43458941 PCT