Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo4g03778 | ATGGATGTAACAAGGAACAAAGTGGTGGAAAGTGAATCTCCCTATTATTACTATTTATCTTCATCACCGTCATCCACCTCTTCTCAAAGCCAACTCTCATCACCGTGCAACGTGAATTCTCTACCAGATCATTCATCATCGCATGCACAAACAACAGAGGCAGTGGTGTTGAGCTCTCACAAGAGGAAAGCGGGGAGAAAGAAGTTTCGAGAGACACGTCACCCGGTGTATAGAGGGGTTCGGCAGAGGAACGGTAACAGATGGGTGTGTGAGGTTCGTGAGCCGAACAAGAAGTCGAGGATATGGCTTGGGACATACCCTACGCCAGAGATGGCAGCTAGGGCACATGACGTGGCTGTCCTAGCACTTAAGGGCACCTCTGCTGTGTTCAATTTTCCTGATTCAGTTTCTCTTCTTCCGGTTGCAAAGTCATCTTCAGCTGCAGATATAAGAGTTGCTGCATCAAAAGTATCAAAGGTTTTTGGCCCTTCTTCTTCCTCAGTAACATTAACCAGTTCTTCATCATCTAATTCCCGGGTCGAGACTAAGCCTTGTTTGGTTGATGATTTTGTTATGACTACGAATAATGATATTGATGAGGCCAAATCAGTGTTTTTTGATGAGGAGGCGTTCTATAATATGCCAGGTTTGTTAGATAGTATGGCAGAGGGTTTGCTTATTACTCCACCGTCTATGAAGAGAGCATTTGATTGGGACGAGCTTGATTGTGAAACAGATCTCACTCTCTGGAAAGATTAA | 759 | 0.4453 | MDVTRNKVVESESPYYYYLSSSPSSTSSQSQLSSPCNVNSLPDHSSSHAQTTEAVVLSSHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEVREPNKKSRIWLGTYPTPEMAARAHDVAVLALKGTSAVFNFPDSVSLLPVAKSSSAADIRVAASKVSKVFGPSSSSVTLTSSSSSNSRVETKPCLVDDFVMTTNNDIDEAKSVFFDEEAFYNMPGLLDSMAEGLLITPPSMKRAFDWDELDCETDLTLWKD | 252 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo4g03778 | 252 | MobiDBLite | consensus disorder prediction | 25 | 57 | - | - | |
Pumo4g03778 | 252 | SUPERFAMILY | DNA-binding domain | 76 | 135 | IPR016177 | GO:0003677 | |
Pumo4g03778 | 252 | Pfam | AP2 domain | 75 | 125 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo4g03778 | 252 | Gene3D | AP2/ERF domain | 76 | 134 | IPR036955 | GO:0003700|GO:0006355 | |
Pumo4g03778 | 252 | SMART | rav1_2 | 76 | 139 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo4g03778 | 252 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 25 | 251 | IPR045277 | GO:0003700 | |
Pumo4g03778 | 252 | ProSiteProfiles | AP2/ERF domain profile. | 76 | 133 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo4g03778 | 252 | CDD | AP2 | 77 | 135 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo4g03778 | 252 | FunFam | Ethylene-responsive transcription factor 2 | 75 | 134 | - | - | |
Pumo4g03778 | 252 | PRINTS | Ethylene responsive element binding protein signature | 77 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo4g03778 | 252 | PRINTS | Ethylene responsive element binding protein signature | 99 | 115 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo4g03778 | 252 | MobiDBLite | consensus disorder prediction | 25 | 69 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo4g03778 | Pumo-Chr4 | 77816964 | 77817722 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo4g03778 | 40 | 250 | AP2-EREBP Transcription Factor Family | AT5G51990 | 44.186 | 1.23e-54 | 174 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Pumo4g03778 | AP2 | 1e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo4g03778 | - | - | gmx:100816109 | 374.785 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo4g03778 | 4 | 77816964 | 77817722 | Pumo4g03778 | 4 | 77816964 | 77817722 | ECH | |
Pumo4g03778 | 4 | 77816964 | 77817722 | Pumo11g01350 | 11 | 43454585 | 43458941 | PCT |