Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03766 ATGTATAGCAATTTCAAGGAGCAGGCGATAGAGTACGTGAAGCAGGCCGTGCAGGAAGACAATGCAGGAAACTACGCGAAAGCGTTCCCTCTGTACATGAATGCGTTGGAGTACTTCAAGACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTTACCGAGTATCTGCGCCGGGCCGAGGAGATTCGGACCGTGCTTGATGACGGTGGGCCCGGCCCGGCCTCCAACGGGGACGCGGCTGTGGCTGCAAGGCCCAAGACCAAGCCCAAGGACGGCGGCGAAGGGGGTGATGGTGAGGACCCCGAGCAGGCCAAGCTCCGGGCCGGGCTCAACTCGGCCATCATAAGGGAGAAGCCCAACGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGCGCCAAACAGGCCTTGCAGGAGGCTGTGATTTTGCCTGTGAAGTTCCCTCAGTTCTTTACTGGGAAAAGACGGCCCTGGAGAGCTTTCTTGTTGTATGGACCTCCTGGAACGGGAAAATCATATTTGGCCAAGGCAGTTGCAACAGAAGCTGAGTCCACGTTTTTCAGTGTTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCGAAATGGCTCGAGAAAGTGCCCCTTCTATCATATTTATTGACGAAATTGATTCCCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGGATTAAAACAGAGCTTCTGGTGCAGATGCAGATCCTTCCGCCCCCTATTACGAGGACAGATTTTGAGAAGGTACTAGCTAGACAAAGGCCTACAGTAAGCAAGGCCGACCTTGATGTTCACGAGAGATTCACGAAGGAATTTGGAGAGGAAGGTTAA 906 0.5199 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRTVLDDGGPGPASNGDAAVAARPKTKPKDGGEGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQILPPPITRTDFEKVLARQRPTVSKADLDVHERFTKEFGEEG 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03766 301 Gene3D - 6 75 - -
Pumo4g03766 301 Pfam ATPase family associated with various cellular activities (AAA) 168 260 IPR003959 GO:0005524|GO:0016887
Pumo4g03766 301 MobiDBLite consensus disorder prediction 71 110 - -
Pumo4g03766 301 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Pumo4g03766 301 FunFam Katanin p60 ATPase-containing subunit A-like 2 125 241 - -
Pumo4g03766 301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 297 IPR027417 -
Pumo4g03766 301 SMART smart 2 79 IPR007330 -
Pumo4g03766 301 SUPERFAMILY MIT domain 2 81 IPR036181 -
Pumo4g03766 301 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Pumo4g03766 301 SMART AAA_5 163 281 IPR003593 GO:0016887
Pumo4g03766 301 MobiDBLite consensus disorder prediction 91 110 - -
Pumo4g03766 301 Pfam Vps4 C terminal oligomerisation domain 258 298 IPR015415 -
Pumo4g03766 301 CDD MIT_VPS4 4 77 IPR045253 -
Pumo4g03766 301 PANTHER AAA DOMAIN-CONTAINING 15 260 - -
Pumo4g03766 301 Gene3D - 126 260 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03766 Pumo-Chr4 77644227 77650449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03766 106 280 Calmodulin-binding Proteins AT3G56690 43.646 7.89e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03766 K12196 - gmx:100788150 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03766 4 77644227 77650449 Pumo4g03766 4 77644227 77650449 ECH
Pumo4g03766 4 77644227 77650449 Pumo11g01325 11 43131713 43135961 PCT