Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03764 ATGAGTTTTAGGGAGTGCAATGTAGAAAACAAGAAGAATCAATGTCTTCAAACCCCAACTTTTATTGAGTGGCTCAAACCTTCATCTTCCTCTCTAACTAGTTCAATTTCATCATCACCTCCTTCTTCCTCCTTGACTCAGCATGAACAACTTGCCCAAGAAACGATCCAGTTTTTGCCCTTCACGGAAGATCACCATGGAGTCCAAAAGGATGGTTTAGGAGTAAAAGAAGAGAAGGTGGAACAAGTGACTGTGGCTTTGCACATTGGATTGCCTAACACAGGAGGCCATGACCCTGATGATGATCATGATGCTGATGAGAAGAAGGTTTTCCATGTTAAGGAAGAAGAACCACCCTTGAAGAAAAGCTTCCAGGGTTGTTCTAATTTTAACCAGCAGGGGCGAAGATTTTGGATTCCAACTCCTGCTCAGATCCTTGTTGGACCCATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCACGGGTCAGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAGCCCTTGAAGGACTTCAGAACCCTCCAAACCCACTACAAGAGAAAGCACGGTGCAAAACCATTTATGTGCCGAAAGTGTTCAAAGTCCTTTGCAGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGAAAGTTGTGGTATTGCACTTGCGGCTCAGATTTTAAGCACAAAAGGTCCCTTAAGGATCATATTAGATCCTTTGGGAAAGGTCACTCCCCACTTCCTTCTCTTGAAGGCTTTGTCGAGGATGAGAAGGAATGCGTTACCGGTTCTGATGAAGATGATGTTGCTCATACATGA 948 0.4409 MSFRECNVENKKNQCLQTPTFIEWLKPSSSSLTSSISSSPPSSSLTQHEQLAQETIQFLPFTEDHHGVQKDGLGVKEEKVEQVTVALHIGLPNTGGHDPDDDHDADEKKVFHVKEEEPPLKKSFQGCSNFNQQGRRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPLPSLEGFVEDEKECVTGSDEDDVAHT 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03764 315 SUPERFAMILY beta-beta-alpha zinc fingers 132 175 IPR036236 -
Pumo4g03764 315 Gene3D Classic Zinc Finger 151 174 - -
Pumo4g03764 315 FunFam Zinc finger protein WIP2 205 287 - -
Pumo4g03764 315 SMART c2h2final6 199 231 IPR013087 -
Pumo4g03764 315 SMART c2h2final6 236 256 IPR013087 -
Pumo4g03764 315 SMART c2h2final6 152 174 IPR013087 -
Pumo4g03764 315 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Pumo4g03764 315 SUPERFAMILY beta-beta-alpha zinc fingers 222 256 IPR036236 -
Pumo4g03764 315 Gene3D Classic Zinc Finger 232 289 - -
Pumo4g03764 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Pumo4g03764 315 Pfam Zinc finger, C2H2 type 152 171 IPR013087 -
Pumo4g03764 315 PANTHER ZINC FINGER PROTEIN WIP2 27 302 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03764 Pumo-Chr4 77616259 77620270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03764 7 305 C2H2 Transcription Factor Family AT1G08290 57.101 9.62e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g03764 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03764 - - gmx:100800644 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03764 4 77616259 77620270 Pumo4g03764 4 77616259 77620270 ECH
Pumo4g03764 4 77616259 77620270 Pumo11g01319 11 43034896 43038798 PCT