Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03759 ATGGCGAGCCACAGAATAGGAGAACTTGGTTTGTCTGAGTCAGGACCTTCAAGTCACCACATCCCTTATGGAGTGCTTCACGGAATTAACACTCCTGCATCAAGCTTGATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTTAAGGGTAGAAATGATGAGGACAAAGCATCTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGAGGTGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGTCTTTCTAGCAAAACTGAGCCCCCCTTTGAGGCAGAATCTCCCATAAGTAAAAAGGCATCTTCTTCAGATCACCAGGCTTTTGATCAGCAGCATCTGCAGCATAGACAGCAACTTCAACAGGAGATGGCAAGTGATGCCCCAAGAACAGCCTCTTCACAGAATCAATCAGCAGCCAAAGAAAAGAGAAAGGGAGCTGGTTCTACATCAGAGAAACCACTTGATGCAAAGACATTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTTTCCCAGCTGGAACAAGAACTTCAAAGAGCACGCTCTCAGGGCTTGTTCGTGGATTGTGGTGCTGTTGGAAGTACTGTAAGCTCTGCAGGAGCCGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGAAGAACACAGGCTAATGGGGGAGCTCCGGAACGGGTTGCAAGCACCGTTATCAGACAGTGATATGAGAGTGATGGTGGATGGATATCTTTCTCACTATGATGAGATTTTCAGGCTCAAGGGTGTGGCTGCTAAATCAGATGTCTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGCTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGCTGATTCAACAGTTGGAGCCACTAGCTGAGCAACAGATAATGGGGATGTATGGCCTGAGGCATTCCTCACAGCAAGCAGAAGAAGCACTCTCACAGGGCCTCGAGCAGTTGCAACAGTCTCTGGTGGACACAATAGCTGGAGGCCCAGTCGTTGATGGTGTGCAACAAATGGTCGTTGCCATGGGCAAACTTGCCAATCTTGAAGGATTTGTTCGCCAGGCTGATAATTTGAGGCAACAGACTCTTCATCAACTATGTCGATTACTAACAGTTCGTCAAGCAGCACGGTGCTTTATTGTCATTGGAGAGTACTATGGACGTCTTCGTGCCCTTAGTTCTCTTTGGGCATCAAGACCAAGAGAGACCTTGATCAGCGACGATAACTCATGCCAAACAACTACGGAAATGCAAATAGTCCAACATTCTCAGAACCATTTCTCAAGTTTCTGA 1455 0.4667 MASHRIGELGLSESGPSSHHIPYGVLHGINTPASSLINQGSAFDFGELEEAIVLHGVKGRNDEDKASLFTARPAATLEMFPSWPMRFQQTPRGGSKSGGESTDSGLSSKTEPPFEAESPISKKASSSDHQAFDQQHLQHRQQLQQEMASDAPRTASSQNQSAAKEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLSQLEQELQRARSQGLFVDCGAVGSTVSSAGAAMFDMEYARWLEEEHRLMGELRNGLQAPLSDSDMRVMVDGYLSHYDEIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMGKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLISDDNSCQTTTEMQIVQHSQNHFSSF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03759 484 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Pumo4g03759 484 MobiDBLite consensus disorder prediction 88 111 - -
Pumo4g03759 484 ProSiteProfiles DOG1 domain profile. 245 453 IPR025422 GO:0006351|GO:0043565
Pumo4g03759 484 SMART brlzneu 177 242 IPR004827 GO:0003700|GO:0006355
Pumo4g03759 484 MobiDBLite consensus disorder prediction 120 167 - -
Pumo4g03759 484 MobiDBLite consensus disorder prediction 168 183 - -
Pumo4g03759 484 Pfam bZIP transcription factor 180 221 IPR004827 GO:0003700|GO:0006355
Pumo4g03759 484 Gene3D - 180 229 - -
Pumo4g03759 484 PANTHER TRANSCRIPTION FACTOR TGA9 129 456 - -
Pumo4g03759 484 Pfam Seed dormancy control 263 337 IPR025422 GO:0006351|GO:0043565
Pumo4g03759 484 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Pumo4g03759 484 MobiDBLite consensus disorder prediction 80 183 - -
Pumo4g03759 484 FunFam BZIP family transcription factor 180 229 - -
Pumo4g03759 484 Coils Coil 200 227 - -
Pumo4g03759 484 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Pumo4g03759 484 CDD bZIP_HBP1b-like 181 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03759 Pumo-Chr4 77536734 77544687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03759 126 484 bZIP Transcription Factor Family AT1G08320 69.167 1.99e-180 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo4g03759 DOG1 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03759 K14431 - gmx:100775461 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03759 4 77536734 77544687 Pumo4g03759 4 77536734 77544687 ECH
Pumo4g03759 4 77536734 77544687 Pumo11g01315 11 42967014 42974948 PCT