Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03752 ATGTACCATCATCATCACCAACACCAAGGAAAAAACATTCATTCTTCTTCCAGAATGCCAATCCCCTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGGTCTGGTGATTCTGGACTAGTGCTTTCAACTGATGCTAAGCCTAGATTAAAATGGACACCAGATCTTCATGCCAGGTTTATAGAAGCAGTCAACCAGTTAGGGGGAGCTGACAAGGCAACTCCAAAAACAGTAATGAAACTCATGGGAATTCCAGGACTTACTTTATATCATCTAAAGAGTCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACACAAAATCCCAACAAGTGCAGCAACTGGGGAGAGACTTTCTGAAACCAATGGTAGTCACATGAACAAATTAAGCCTTGGACCGCAGGCTAACAAAGATTTGCATATAAGCGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAGGCACAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAGGAGACTCTTGGCAGACAAAATTTGGGAATAGTAGGACTTGAAGCTGCCAAAGTTCAACTTTCAGAGCTGGTATCCAAAGTCTCATCACAGTGCCTCAACTCAGCATTCACAGAGCTGAAGGATTTGCAAGGATTTTGCCCTCAGCAAACACAAACCAACCCGCCAAACGATTGCTCAATGGACAGTTGTCTTACCTCCTGTGACAGATCACAAAAGGAGCAAGAGATTCAAAATGGCTTAAGACACTTCAACAGCCATATGTTCATGGAACAAAAGGAAGCCACAGAAGGTCCCAACAACCTTAGGAACCCTGAACTCAAGTGGTGTGATGATGGGAAAAAGAACACCTTCCTTGCCCCATTGAGCAAGAATGAAGAAAGAAGAAACTATGCCGCTGAAAGCAGTCCCAGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAATGGAAGCAGCATGTATCCTGAGAGACTAATCTCAGAAAGCCAATCAGACGGTGAGTTCCAGCATAGGAACAGAATCAAGCCAGAAACAATGAAACCAGTGGATGAAAAAGTTTCTCAAGATTATAGGTTGCCTGCTTCTTACTTTGCAGCAGCAAGATTGGACCTAAACACTCATGGAGACAATGAAGCTGCAGCCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTGA 1266 0.4344 MYHHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKIPTSAATGERLSETNGSHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSAFTELKDLQGFCPQQTQTNPPNDCSMDSCLTSCDRSQKEQEIQNGLRHFNSHMFMEQKEATEGPNNLRNPELKWCDDGKKNTFLAPLSKNEERRNYAAESSPSNLSMSIGLERETENGSSMYPERLISESQSDGEFQHRNRIKPETMKPVDEKVSQDYRLPASYFAAARLDLNTHGDNEAAATCKQLDLNRFSWS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03752 421 FunFam Myb family transcription factor 46 104 - -
Pumo4g03752 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Pumo4g03752 421 Pfam MYB-CC type transfactor, LHEQLE motif 148 194 IPR025756 -
Pumo4g03752 421 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
Pumo4g03752 421 Gene3D - 46 104 - -
Pumo4g03752 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 316 IPR044848 GO:0003700
Pumo4g03752 421 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Pumo4g03752 421 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Pumo4g03752 421 Coils Coil 150 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03752 Pumo-Chr4 77343781 77346392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03752 79 421 G2-like Transcription Factor Family AT3G04030 50.286 8.39e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo4g03752 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03752 - - gmx:100810396 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03752 4 77343781 77346392 Pumo11g01312 11 42912973 42916480 PCT