Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03740 ATGGAGGATCTCCCACCTGGTTTTCGATTCTACCCAACAGAAGAAGAGCTAGTTGCTTTCTATCTACACAACCAGCTAGAAGGCCAAATACATGACACCAGCAGAGTCATTCCAGTCATTGACATCAATGGCGTAGAGCCATGGAACCTTCCAACACTTGCAGGGGAGCTTTGTCGTGGTGACACGGAGCAATGGTTTTTCTTTTCACCAAGACAAGAGAGAGAGGCCAGAGGAGGCAGACCCAACAGAACCACAGCAAGTGGGTATTGGAAGGCCACAGGTTCCCCTGGCCATGTTTACTCTTCTGACAACAAAGTCATTGGTATGAAGAAAACCATGGTGTTTTACAAAGGGAAAGCTCCCACTGGAAGGAAAACCAAATGGAAGATGCATGAGTATAAATCCATTGAACACTCTGACCAATCCAACACTGCCCCTCCAAAGTTGAGGCACGAATTCAGTTTGTGTCGTGTTTATGTGATATCGGGAAGCTTTCGATCGTTTGATCGACGCCCACTTGAGATGCCAAGACTTGAGTTACGAGTTGATGGAGACAGAGGTGGTGCTTCAACAAGTGCTCAACAGAGAGCACCAGTGGTGGATGGATCAAGTTCCTCTGATACTTCCCACTCTGGAGGAGGAGGAGGGGATGCTCATATCTCAGAGGCTGGAGCTGGGTCAAGTGGAAATTGGAATGCAAGTAATAGGGTTGAGGAACCACTTTGGGAATGGGAACAACTTAATTGGGCATGA 753 0.4754 MEDLPPGFRFYPTEEELVAFYLHNQLEGQIHDTSRVIPVIDINGVEPWNLPTLAGELCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKATGSPGHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYKSIEHSDQSNTAPPKLRHEFSLCRVYVISGSFRSFDRRPLEMPRLELRVDGDRGGASTSAQQRAPVVDGSSSSDTSHSGGGGGDAHISEAGAGSSGNWNASNRVEEPLWEWEQLNWA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03740 250 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Pumo4g03740 250 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Pumo4g03740 250 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 188 - -
Pumo4g03740 250 MobiDBLite consensus disorder prediction 183 234 - -
Pumo4g03740 250 MobiDBLite consensus disorder prediction 188 212 - -
Pumo4g03740 250 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Pumo4g03740 250 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03740 Pumo-Chr4 77217153 77219149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03740 2 250 NAC Transcription Factor Family AT3G44350 56.225 2.22e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g03740 NAM 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03740 - - gmx:100784960 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03740 4 77217153 77219149 Pumo11g01296 11 42674035 42675661 PCT