Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03733 ATGATGGAAGGGGTTTCGAGGGAGGCTCAGATGTCGATTGCTGCTTCGTCCATGTTTCCTGGCTTCAGATTTTGCCCAACCGATGAGGAGTTGATTTCTTATTACCTCAGGAAAAAGTTGGACGGTCATGAAGAGAGTGTTCAAGTAATTTCTGAGGTTGAGCTTTGTAAATACGAGCCTTGGGATTTACCAGCCAAATCGTTCATTCAATCAGATAACGAATGGTTTTTCTTCTCTCCCCGTGGAAGAAAGTACCCAAATGGTTCACAAAGTAAAAGAGCAACTGATTGTGGATATTGGAAGGCCACTGGCAAAGAGCGTAATGTAAAGTCAGGTTCTAACGTTATAGGAACAAAGCGGACTTTGGTGTTCCACTTGGGGCGTGCACCTAAAGGGGAGAGGACTGAATGGATCATGCATGAGTACTGCATCAATGACAAGTCTCAGGATACTTTGGTCATATGTCGCCTGAAGAGGAACACAGAGTTCCGATTGAGCGATGCTTCCAATAGAGCTTCTTCAAGTCAAAGGCACCCCGTGAATTCACATGAAAGTGGTTGTGCTATCTCAGAAGGTGGCATTGATCAAAGGGATGTATGTGAGCAAGACAAAGAGGTAGGATGTAGCTCCAAGAGGGACAGTAGCAGTTATGGTTCTCCTTCAATGGAGCAAATTGATTCTATGTCTGAATCGAATCAGCGACCAGTTAATGAAGCTACTTTGACAGAATCTTCAGGTCAACCAAAGGAGGGGTATGAAGAGGATTGTTATGCTGAGATACTAAAGGATGATATCATCAAATTAGATGAATCATCAATCATAGAAGAGGGTCACACAAGACCACAGGATCCTACACAGATGCACCATCCTGCACCACAAGGCACAGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCATGCTCCTGCAGTAGTTCGTTTCCCAAGCACAATGCACTCGTCAAAGAGTGTCTTCTTCGCTAGCATAACCAACAGTTTGGTGGTATTTGCTTTCTTCATTTTCACTTTGATAGTTCTATGTTTTTGGTCTTTATTGGGTGGACACAAACAAGTAAAGTATTGTGGGAAATTTTCGGGTGTAAATTGTGATTAG 1119 0.4307 MMEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATDCGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDTLVICRLKRNTEFRLSDASNRASSSQRHPVNSHESGCAISEGGIDQRDVCEQDKEVGCSSKRDSSSYGSPSMEQIDSMSESNQRPVNEATLTESSGQPKEGYEEDCYAEILKDDIIKLDESSIIEEGHTRPQDPTQMHHPAPQGTAQRRIRLRVGNSKHAPAVVRFPSTMHSSKSVFFASITNSLVVFAFFIFTLIVLCFWSLLGGHKQVKYCGKFSGVNCD 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03733 372 MobiDBLite consensus disorder prediction 166 250 - -
Pumo4g03733 372 MobiDBLite consensus disorder prediction 196 210 - -
Pumo4g03733 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 229 - -
Pumo4g03733 372 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Pumo4g03733 372 MobiDBLite consensus disorder prediction 166 183 - -
Pumo4g03733 372 Gene3D NAC domain 27 178 IPR036093 GO:0003677|GO:0006355
Pumo4g03733 372 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Pumo4g03733 372 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
Pumo4g03733 372 MobiDBLite consensus disorder prediction 211 247 - -
Pumo4g03733 372 MobiDBLite consensus disorder prediction 277 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03733 Pumo-Chr4 77172202 77176195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03733 5 354 NAC Transcription Factor Family AT2G27300 44.658 6.21e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g03733 NAM 6.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03733 - - cam:101495489 595.504