Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03722 ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGTCGCGGCGCGTTTGGCGCTGCGATTCTCGTAAACCACAAAGCGGAGAAGAAGAAGTACGTGCTGAAGAAAATCAGGCTCGCGCGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAGATGGCGCTTATTGCTCGAATTCAGCATCCTTACATTGTGGAATTTAAAGAGGCTTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAATCAAATGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAACTACTTTTGGCAGTGGAATACCTGCATTCAAATTTTGTTTTACATCGCGACCTAAAGTGTTCCAACATCTTTCTTACCAAGGAGCAAGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGTTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTGAAAACACTGATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGTCCAACAGCATCTGAAATCTTAAAGCACCCTTATTTACTGCCTTATGTTGATCAATATCGTTCATCTTTCTGTACTAGAACAGCTAGTTCTCCTGAAAAGCCAATTTCTGCTGTCCATGATCCTCGAAAAAATAAGCCAGAAAGTCAAACAGTAGTAGTTCAAAAGTGTGATAGCAAAATCACTGAAATAGACTTGACATCAATTGAGGATGATGGCTCTGAGCAACTCCTGCCTAGGGAAGAAGGAAATGGCTCCAGCAAAGTCAATGCCAAAACAGATGAGCAAGAGGTGACGAAGCAATCTAATAATGAACACCATTCTAATGTTGTATCTAAGCAACCAAAAACAATTAAGAATGTAGTGACAGCTTTAAAAAATGGAAAACTTAGAGAGACAAGTTCTCCAATTAGAGGCAATCGCATAAAGGTTGGTGGTGTGTTGACACATAAAATAAATACAGAGACAGTGTCCAAATTGCCCAAACCCAATTTTGGTGCTTATGATTTGAAGCCTAATTTGGAGGTGCCAACTATTGCACCTTCAAAAGCAACTCCTGATTCTGCAAAAAGAATGCAAGGATCACATACTTCAAAGCATCAGTTACCAATGATAGAATCCACACCAAAAACTAAACCTCGACATAATGTGATTCCACCATCTGGTCCAGTCAAACAAGTAGAAGGATGTGAAGTTCCTTCCAAGCCAAGGCAAAAGACTCCTCCAAGCTTACTTAAACCACCTTCTTTTCCAGGACATGTGAGGCAGGCTGGGTTTGATGTTCCAAATGCAGCAAATAATACTGGAAAGTCAAGTCCAAAGAAAATGGTCCGCGAGCCTAAGATGAACCATCATCAGTTGACCAACAGTCATCTACCACATGTTTCTAGAGAGATTAATAGAGAGCCTTTGAAGACTTTTGAAAGCAGTTCCAAAGGAATGCAAACAGATAGCAGCAATTCTGTCTCATCTTCACTCTCTATTCAAGGATTCGAACTTTCTGATTTTGCAACCACTTTTATTGACTTAAGTGAACCAACACTTCCTGATCATGAGAGTTTAAACCACACTGGAAACGTGGAATCACGTCCAGATAGCAGTTCACCTGCATCCTATTTGCATTTTGAGATGTCTGAACAAATTTCTGGGGAAACCCCTGTGGTTACACCACGTTTTCAGAATATAACTACTAGTAATGAGAAAGTAAGTCCCAGTTTAACTCTTGATCACTCGGTTCAAGATGCTGAGGTAATGTTTGCTTCTGATGATAGTTTTCCCATAAATCAGAGGACTACATCTGCAGGCTCCAAGTGCGATAATAGATCTGTAGATCCCTCTTCTGAAATCACAGAAGAAATCAAAGACCATCAAGATATTTCTCAGGAAATGACTTCAACCAAGTCTCTCCAACAGTCATTCCCCATTTCTGGAGAAAAGTCTGTTTGTGAAGAATTTGGTCCAGCAAGCAAGCCAAATAATATGGTTGATAAAGTTAGCCAGCCAAAGCTTATGTGCATCTCCACTGGTGATGACAAATTCATGGTAAGGGAAAGACTGTCACCAGTGGATGAAACTGCTCCTTTGATTATCTCTACTAAAATTTCAAGCCAGAAAATTTTGCAAGAGGAGAAAGGAACAGTTTTACAGAATCCAGCACCAGAAAGGCCAGCTGTTGGCCATCTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTACCGCGTGGGGAGTGAGCAGCCAGTGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAACATTGTGAGGGATGATTTAGAAATGAGAAATGTGAGCACTCCTTTGACCCTAAAATCTTCAAATTGCTCTGAAGCTATTTGCTTGAAGTCAAATATTTCTGATAATATGGAAATCAGAAACTCGAGTAGTTCTCTTAACTTAAAATCTTCAAGTTGCACCGACTCGTTGAGCATGAAATCAAGTTTTTCTGATCATCCTGGTGTTAGAGAACAAGATGTGAAAAAACCTGATTCTCTTGTTTCAAAATCTGATTCCTCTGAGTATACCAAACGTAACACTCCTACATCTGAAGAGGAAACACCGGCAAAGGAAATTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAGGCACTTGAAGGACTGTTAGAATTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTAGTTCTGAAGCCCTTTGGAAAAGATAAAGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTGATGATTGAGGAAAGTGGGGGACGCAGTTAA 3081 0.4122 MESRMDHYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKEQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLLPYVDQYRSSFCTRTASSPEKPISAVHDPRKNKPESQTVVVQKCDSKITEIDLTSIEDDGSEQLLPREEGNGSSKVNAKTDEQEVTKQSNNEHHSNVVSKQPKTIKNVVTALKNGKLRETSSPIRGNRIKVGGVLTHKINTETVSKLPKPNFGAYDLKPNLEVPTIAPSKATPDSAKRMQGSHTSKHQLPMIESTPKTKPRHNVIPPSGPVKQVEGCEVPSKPRQKTPPSLLKPPSFPGHVRQAGFDVPNAANNTGKSSPKKMVREPKMNHHQLTNSHLPHVSREINREPLKTFESSSKGMQTDSSNSVSSSLSIQGFELSDFATTFIDLSEPTLPDHESLNHTGNVESRPDSSSPASYLHFEMSEQISGETPVVTPRFQNITTSNEKVSPSLTLDHSVQDAEVMFASDDSFPINQRTTSAGSKCDNRSVDPSSEITEEIKDHQDISQEMTSTKSLQQSFPISGEKSVCEEFGPASKPNNMVDKVSQPKLMCISTGDDKFMVRERLSPVDETAPLIISTKISSQKILQEEKGTVLQNPAPERPAVGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINIVRDDLEMRNVSTPLTLKSSNCSEAICLKSNISDNMEIRNSSSSLNLKSSSCTDSLSMKSSFSDHPGVREQDVKKPDSLVSKSDSSEYTKRNTPTSEEETPAKEILDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIEESGGRS 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03722 1026 MobiDBLite consensus disorder prediction 277 303 - -
Pumo4g03722 1026 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 975 - -
Pumo4g03722 1026 SUPERFAMILY Protein kinase-like (PK-like) 4 302 IPR011009 -
Pumo4g03722 1026 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03722 1026 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Pumo4g03722 1026 MobiDBLite consensus disorder prediction 597 619 - -
Pumo4g03722 1026 MobiDBLite consensus disorder prediction 917 933 - -
Pumo4g03722 1026 MobiDBLite consensus disorder prediction 437 454 - -
Pumo4g03722 1026 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Pumo4g03722 1026 MobiDBLite consensus disorder prediction 599 619 - -
Pumo4g03722 1026 MobiDBLite consensus disorder prediction 426 494 - -
Pumo4g03722 1026 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03722 1026 CDD STKc_Nek 7 262 - -
Pumo4g03722 1026 MobiDBLite consensus disorder prediction 317 366 - -
Pumo4g03722 1026 MobiDBLite consensus disorder prediction 352 366 - -
Pumo4g03722 1026 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03722 1026 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Pumo4g03722 1026 Gene3D Transferase(Phosphotransferase) domain 1 90 376 - -
Pumo4g03722 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Pumo4g03722 1026 MobiDBLite consensus disorder prediction 910 953 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03722 Pumo-Chr4 76978548 76985149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03722 14 262 MAP Kinase Kinase Kinase AT1G53570 31.890 8.48e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pumo4g03722 Pkinase 1.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03722 K08857 - gmx:100818943 1819.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03722 4 76978548 76985149 Pumo4g03722 4 76978548 76985149 ECH
Pumo4g03722 4 76978548 76985149 Pumo11g01262 11 42256717 42257460 PCT