Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03718 ATGGAAGGTGTTCAGATTGAAAAAGTCTTCATCTTGTTTTGTTTTGGTCTAATAATTACAATGAGTTATGGTGCTACAAACCCAGATGATGTCAAAGTTTTGAATGATTTCAGAAAAGGGTTGGAGAATCCAGAGCTTTTGAAGTGGCCAGAGGAGGGAGATGATCCCTGTGGTCCTCCTTCATGGCCTTTTGTGTACTGTTCTGGAGATAGAGTAACTCAGATTCAGGCTAAGAATCTTGGTCTTAGAGGATCATTGCCTCAGAACTTTAATCAACTCTCAGAACTCTACAATTTGGGTCTCCAACGCAACAACCTTAGTGGGATGTTGCCTGCTTTTAGTGGATTATCCAAATTGGAATTTGCTTTCTTGGATTACAATGCATTTGATGCAATCCCAGCTGATTTCTTTGATGGACTTAGCAGCCTTAGGGTCTTGTCTTTGGAAGAAAATCCACTGAATGTAAGTAGTGGCTGGTCGTTTCCCATGGATTTAGAAAAGTCAGTGCAATTAACTAATCTTTCTTTGGTGCATTGTAATTTGGTTGGACCATTGCCGGATTTTCTGGGCACACTGCCATCCCTCACAAATCTGAGGCTTTCAGGGAACAAGCTTTCTGGTGCTATTCCAGATACTTTTGCTCAATCTTCAATCCAGGTTTTGTGGTTGAATGATCAAGAAGGTGGTGGATTGACTGGTCCTATTGATGTTATTGCTTCAATGATTTTCCTTCGACAGGTTTGGCTACATGGAAACCAGTTCACTGGGCCAATTCCTCAGAATATTGGAAATCTTACTTCCTTGCAGGAACTCAATCTCAATAGTAATCAACTTGTTGGCTTGATTCCAGAGTCCCTAGCACATATGGACCTTGAGATCCTAGTGTTAAATAATAACATGCTAATGGGTCCAATACCAAAATTTAAGGCTGTCAATGTTTCTTATGATGACAATTTATTTTGTCAACATGAGCCTGGGATTGAATGTTCCCCTCAAGCTACTGTACTGCTGGATTTTCTGGATAAGCTGAATTACCCTTCATTTCTCATTTCTGATTGGGTTGGTGATGAACCATGCACACGCAGCACAGGGTCATGGTTTGGATTGAGCTGCAATTCCAACTCAGAGGTATATATTATCAATCTACCTAGACACAAGCTAAACGGTACTCTAAGTCCCTCACTTGCTAAGTTAGATTCACTTCTTGAAATTAGGCTGGCAGGAAACAATATAACAGGCTCAGTTCCCAGTAATTTTACCAACTTAAAATCTCTGAGGTTGTTGGACTTAAGTGATAACAACCTTGAGCCTCCATTTCCAAAATTTCATAACGATATGAAGGTTATTACTGTGGGTAACCCTCTTCTTCCTAATCAAACTGGAGGAAGTCCTAGTCCTATGCCTATCAACAGCCCACCTTCACCACAGAATCCATCACATCCTCCATCCTCTCATGAGCCACCTGTTCCAGATCAGAGTTCAAGACCAAATCAATCCAAACCAAATGACTTGAAAATATTCAAAACAGTAGGAATAGTGGCTGGAGTTGCAGTGTTTGCAGTTGTAGCACTTTTGGTTGTTTATCTCTTCCTATGTTGCAGGAAGAACAAAAAAGCCTCCTTGGATGCTCCAAGTTCCATTGTGGTTCACCCTCGCGATCCTTCTGATCCAGATAACATGATTAAAATTGCAGTTTCAAACGCCACTGGAAGTTTGTCAACAAAGACTGGGACAAGTTCTCTTAGTAACATTAGTGGTGAAACTCAAAACTCTCACATAATTGAGGATGGCAACCTTGTCATCTCTATACAAGTACTACGCAAGGTTACCAATGATTTTGCCTCGGAAAATGAACTAGGCCGTGGAGGGTTTGGGACTGTTTACAAGGGGGAACTAGAAGATGGGACAAAAATAGCAGTGAAGAGAATGGAGCATGGGGTTATTAGCAGTAAGGCAATGGAGGAGTTTCAAGCTGAAATAGCTGTTCTTTCCAAGGTCCGGCACCGGCATCTGGTATCCTTGTTGGGGTATTCCATTGAAGGCAATGAAAGACTTTTGGTTTATGAATATATGTCTCTTGGAGCTCTAAGCCAGCATCTTTTTCACTGGAAAAGCTTGAAGTTGGAGCCTTTGTCTTGGTCACAGAGGCTAGCGATAGCACTAGATGTTGCTAGAGGGATAGAGTACCTTCACAGTCTTGCCCGTCAGACCTTTATTCATCGAGATCTCAAGTCTTCTAATATCTTATTGGGTGATGATTTTCGGGCTAAAGTTTCAGACTTTGGTTTGGTGAAGCATGCCCCAGATAGTGAGAAGTCTGTAGCAACCAAGCTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTACGGTGTGGTGTTGATGGAACTTCTGACTGGACTTGTGGCACTTGACGAGAGCCGGCCAGAGGAAAGCCGGTACTTAGCTGAATGGTTTTGGCGAATTAAATCGAGCAAGGAGAAGCTTATGGCTGCCATTGATCCAGTTCTGGAGGCATCTGAAGAAACTTCTGAGAGCATAACCATTGTAGCTGAACTTGCTGGACACTGCACTGCAAGGGAAGCACATCATAGGCCAGATATGAGTCATGCAGTCAATGTCCTAGCAGCATTAGTGGAAAAATGGCAACCAGTTGATGATGAATTAGATTGCTACTCTGGCATTGACTACACAAGACCACTTCCTCAAATGTTGAAGATTTGGAAGGAAGCAGAAAGCAAAGAGTTTAGCTATGCTTCTAGTCTTGAAAACAGCAGAAGCAGTATTGCAGCAAGGCCACTTGGGTTTGCAGACTCTTTTACTTCTGCTGATGCAAGATGA 2883 0.4232 MEGVQIEKVFILFCFGLIITMSYGATNPDDVKVLNDFRKGLENPELLKWPEEGDDPCGPPSWPFVYCSGDRVTQIQAKNLGLRGSLPQNFNQLSELYNLGLQRNNLSGMLPAFSGLSKLEFAFLDYNAFDAIPADFFDGLSSLRVLSLEENPLNVSSGWSFPMDLEKSVQLTNLSLVHCNLVGPLPDFLGTLPSLTNLRLSGNKLSGAIPDTFAQSSIQVLWLNDQEGGGLTGPIDVIASMIFLRQVWLHGNQFTGPIPQNIGNLTSLQELNLNSNQLVGLIPESLAHMDLEILVLNNNMLMGPIPKFKAVNVSYDDNLFCQHEPGIECSPQATVLLDFLDKLNYPSFLISDWVGDEPCTRSTGSWFGLSCNSNSEVYIINLPRHKLNGTLSPSLAKLDSLLEIRLAGNNITGSVPSNFTNLKSLRLLDLSDNNLEPPFPKFHNDMKVITVGNPLLPNQTGGSPSPMPINSPPSPQNPSHPPSSHEPPVPDQSSRPNQSKPNDLKIFKTVGIVAGVAVFAVVALLVVYLFLCCRKNKKASLDAPSSIVVHPRDPSDPDNMIKIAVSNATGSLSTKTGTSSLSNISGETQNSHIIEDGNLVISIQVLRKVTNDFASENELGRGGFGTVYKGELEDGTKIAVKRMEHGVISSKAMEEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMSLGALSQHLFHWKSLKLEPLSWSQRLAIALDVARGIEYLHSLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKHAPDSEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLVALDESRPEESRYLAEWFWRIKSSKEKLMAAIDPVLEASEETSESITIVAELAGHCTAREAHHRPDMSHAVNVLAALVEKWQPVDDELDCYSGIDYTRPLPQMLKIWKEAESKEFSYASSLENSRSSIAARPLGFADSFTSADAR 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03718 960 FunFam Leucine-rich repeat receptor-like kinase 331 459 - -
Pumo4g03718 960 SUPERFAMILY L domain-like 331 446 - -
Pumo4g03718 960 Gene3D Ribonuclease Inhibitor 331 459 IPR032675 -
Pumo4g03718 960 Gene3D Transferase(Phosphotransferase) domain 1 691 906 - -
Pumo4g03718 960 SUPERFAMILY L domain-like 26 308 - -
Pumo4g03718 960 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Pumo4g03718 960 PANTHER OSJNBA0070M12.3 PROTEIN 11 960 - -
Pumo4g03718 960 Pfam Leucine rich repeat N-terminal domain 331 372 IPR013210 -
Pumo4g03718 960 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Pumo4g03718 960 SUPERFAMILY Protein kinase-like (PK-like) 591 889 IPR011009 -
Pumo4g03718 960 SMART LRR_typ_2 265 288 IPR003591 -
Pumo4g03718 960 SMART LRR_typ_2 140 163 IPR003591 -
Pumo4g03718 960 SMART LRR_typ_2 192 215 IPR003591 -
Pumo4g03718 960 SMART LRR_typ_2 93 115 IPR003591 -
Pumo4g03718 960 SMART LRR_typ_2 398 421 IPR003591 -
Pumo4g03718 960 SMART LRR_typ_2 116 139 IPR003591 -
Pumo4g03718 960 SMART serkin_6 613 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03718 960 Pfam Protein tyrosine and serine/threonine kinase 616 887 IPR001245 GO:0004672|GO:0006468
Pumo4g03718 960 CDD STKc_IRAK 619 889 - -
Pumo4g03718 960 ProSiteProfiles Protein kinase domain profile. 613 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03718 960 FunFam receptor protein kinase TMK1 691 908 - -
Pumo4g03718 960 MobiDBLite consensus disorder prediction 466 489 - -
Pumo4g03718 960 Gene3D Phosphorylase Kinase; domain 1 574 690 - -
Pumo4g03718 960 MobiDBLite consensus disorder prediction 453 501 - -
Pumo4g03718 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Pumo4g03718 960 FunFam Receptor-like kinase TMK4 28 326 - -
Pumo4g03718 960 Gene3D Ribonuclease Inhibitor 28 327 IPR032675 -
Pumo4g03718 960 FunFam receptor protein kinase TMK1 575 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03718 Pumo-Chr4 76952837 76956895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03718 84 907 Receptor kinase-like Gene Family AT1G55610 31.007 1.27e-87 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pumo4g03718 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03718 - - gmx:100785090 1688.32