Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03714 ATGGCGACGTACTTTCATGGAAGCACTTCGGAAATTCAACCTTCTGCAGATGGCTTGCAAACGCTTTACCTTATGAACCCAACTTACGTACCCTACCCTGACGCGCCGCACCACCCAACTACGCTTCTCGTCAATCCCAACGCGCTCAACCTCGCGAGTATTCCCCACGCGCCGCCAGTCTCACCAAACCAACAGCAACAACAACAACAGCAGCAGCACGTGATTCACGGCGTGCCAAATATCCTCGGATCCAACAATTCCGATGATCACTCCCGACCGTCGTTGTTCGGCGAAAACATCGCCGCCTTCCACGGCTTCTCCGGCGGCGGAGGCGCCGCCTCTTCCGCCGCCCCTCGCCTTCACTACAACCTCTGGGGTCCGGTGGTTGATCAGCCAGGAACGCCGTCTAGCAGCTCCGGTAACGGCGGTTTCCGGCGGCCGAGTCAGCAGGGCTTGTCTCTCAGCCTTTCATCGCAGCAAACGAATTTTAGATCAGTTTCCGGCGAGCTTGACGTCGCCGGACATGGCCACGTTGCCGGAATTGGGAACTCGCCGACGTCGGCGTCGACCGGAGTTTCAGGTGTTATTATGGGGTCGAAGTATTTGAAAGCTGCACAGGAGCTTCTTGATGAAGTTGTTAACGTGGGAAAAGGAATCTACAAAGAGGAAAAATTGGCAGAGAAGGTGAGAGCGAATAGGGAATCTACTAATTCTGGTGCTGGTGGTGGTGATGGTTCAAGTGGTGGAGGAGAAAACAGTGCAGGGAAACAAGTGGTTGAACTCAGCACCGCTCAGAGGCAAGAACTTCAGATGAAGAAGTCCAAGCTTGTCACCATGCTCGATGAGGTAGAACAAAGGTACAGGCAATATCACCACCAAATGCAAATTGTGGTATCATCATTTGAGCAAGCAGCGGGTTATGGGGCGGCAAAATCTTACACTGCCCTTGCCCTAAAGACTATCTCAAAGCAATTCCGGTGCCTTAAAGATGCAATCTCTGCACAAATCAAAGCAACAAGCAAGACATTGGGTGAAGATGATTGCTTAGGAGTTAAGGTAGAAGGGTCGAGGCTTAGGTATGTTGATCACCATCTCCGGCAACAAAGGGCACTTCAGCAACTAGGAATGATTCAGCCCAATGCATGGAGGCCCCAGAGAGGCTTGCCTGAACGAGCTGTTTCAATTCTTCGCGCTTGGCTTTTTGAGCATTTCCTTCACCCCTATCCAAAGGACTCCGATAAAGTTATGCTTGCTAAACAAACTGGACTGGCTAGAAGCCAGGTGTCAAACTGGTTTATTAATGCCCGAGTTCGGCTGTGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAAATGAAGGAGCATGACCAAGCTAACGGTTCAGAAAACACCAAATCAAAAGAATCGAGCAAGGAGTTGGGTTCAACAGCAAATGTTGCACCGGAATCAGGTGCCATTAAACTCGACCATCTCCAATCAAAACAAGAAAGCTTCAACAACCAAAACACTTCTCCAACCGAGATCTCAACAAACTCTTCAATGTCTCCCATGGGAGGGTCCCTTCAATCCCACTCTGGTTTCCATCTTGCAGGATCTTCTGACATGCAAAGGAGTCCAAACAAACCAAGAAGTTCCGAAATGCAAAACTCTCCAAGTAGCATCCTCTCAGTGGACATGGAAATGAAGCATAATGGAGATCATGCAAACAATAGAGAAGCCAACACAAAGTTTGGCATTGAAAGGCACCACCAAAAAGATGGGTACCCTTTGATGACTAGCAATGCAAACCATGGTGGAGGGTTTGGAGCGTTCGCTATGGAAGACATTGGAAGCAGATTTAATGTCACTACAGAACAACTGGCTTCAAGGTTCCATGGAAATGGTGTTTCTCTCACTTTAGGACTTCCCCACAATGAGAACCTTTCTATGTCAGGAACTCAGCATGGATTTCTCTCACAGAATATTCATTTGGGAAGGAGACTTGAGATGGGAACAAATGGAAACGAGTTTTGTGCTATCAACACTCCACCTTCTTCTCACTCAGGCACCACTTATGAGAGCATTGACATCCAAAACAGAAAGAGACAAGCTAATTAA 2097 0.485 MATYFHGSTSEIQPSADGLQTLYLMNPTYVPYPDAPHHPTTLLVNPNALNLASIPHAPPVSPNQQQQQQQQQHVIHGVPNILGSNNSDDHSRPSLFGENIAAFHGFSGGGGAASSAAPRLHYNLWGPVVDQPGTPSSSSGNGGFRRPSQQGLSLSLSSQQTNFRSVSGELDVAGHGHVAGIGNSPTSASTGVSGVIMGSKYLKAAQELLDEVVNVGKGIYKEEKLAEKVRANRESTNSGAGGGDGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVTMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYLEEMKEHDQANGSENTKSKESSKELGSTANVAPESGAIKLDHLQSKQESFNNQNTSPTEISTNSSMSPMGGSLQSHSGFHLAGSSDMQRSPNKPRSSEMQNSPSSILSVDMEMKHNGDHANNREANTKFGIERHHQKDGYPLMTSNANHGGGFGAFAMEDIGSRFNVTTEQLASRFHGNGVSLTLGLPHNENLSMSGTQHGFLSQNIHLGRRLEMGTNGNEFCAINTPPSSHSGTTYESIDIQNRKRQAN 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03714 698 Coils Coil 266 286 - -
Pumo4g03714 698 MobiDBLite consensus disorder prediction 230 256 - -
Pumo4g03714 698 MobiDBLite consensus disorder prediction 131 160 - -
Pumo4g03714 698 Gene3D - 385 464 - -
Pumo4g03714 698 MobiDBLite consensus disorder prediction 674 698 - -
Pumo4g03714 698 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 466 - -
Pumo4g03714 698 MobiDBLite consensus disorder prediction 454 469 - -
Pumo4g03714 698 CDD homeodomain 382 443 IPR001356 GO:0003677
Pumo4g03714 698 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Pumo4g03714 698 MobiDBLite consensus disorder prediction 454 478 - -
Pumo4g03714 698 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Pumo4g03714 698 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Pumo4g03714 698 SMART prehox3 190 334 IPR006563 -
Pumo4g03714 698 Pfam Associated with HOX 195 333 IPR006563 -
Pumo4g03714 698 FunFam BEL1-like homeodomain protein 9 385 447 - -
Pumo4g03714 698 MobiDBLite consensus disorder prediction 495 552 - -
Pumo4g03714 698 SMART HOX_1 382 446 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03714 Pumo-Chr4 76830831 76835040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03714 1 695 Homeobox Transcription Factor Family AT2G35940 44.048 1.06e-137 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo4g03714 POX 9.4e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03714 - - gmx:100779075 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03714 4 76830831 76835040 Pumo4g03714 4 76830831 76835040 ECH